SATO Kengo

サトウケンゴ | SATO Kengo

Affiliation and department：
Job title： Professor
Homepage URL (2)： https://www.sato-lab.org/ , https://www.sato-lab.org/en/

Research field (3)： Systems genomics , Biological, health, and medical informatics , Intelligent informatics

Research keywords (6)： Computational Biology , Machine learning , Sequence Analysis , Bioinformatics , Biomedical data science , Data Mining

Research theme for competitive and other funds (11)：

2022 - 2025 修飾塩基を含むRNAの二次構造解析技術の確立
2019 - 2022 RNA secondary structure prediction using nanopore sequencers
2017 - 2022 Deep analysis of chemical communication space using artificial intelligence technology
2019 - 2021 GenomeGAN: 敵対的生成ネットワークによるインシリコゲノム合成
2016 - 2020 Improving the accuracy of RNA secondary structure prediction by machine learning based on next-generation sequencing data

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Papers (66)：

Kengo Sato, Michiaki Hamada. Recent trends in RNA informatics: a review of machine learning and deep learning for RNA secondary structure prediction and RNA drug discovery. Briefings in Bioinformatics. 2023
Manato Akiyama, Yasubumi Sakakibara, Kengo Sato. Direct inference of base-pairing probabilities with neural networks improves prediction of RNA secondary structures with pseudoknots,. Genes. 2022. 13. 11. 2155
Soichiro Nishiyama, Kengo Sato, Ryutaro Tao. Integer programming for selecting set of informative markers in paternity inference,. BMC Bioinformatics. 2022. 23. 1. 265-265
Kengo Sato, Yuki Kato. Prediction of RNA secondary structure including pseudoknots for long sequences,. Briefings in Bioinformatics. 2022. 23. 1
Shunya Kashiwagi, Kengo Sato, Yasubumi Sakakibara. A max-margin model for predicting residue-base contacts in protein-RNA interactions,. Life. 2021. 11. 11. 1135

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MISC (20)：

佐藤健吾. MXfold2: 深層学習にもとづくRNAの高精度な二次構造予測プログラム,. バイオサイエンスとインダストリー. 2021. 79. 6
佐藤健吾. 世界最高精度のRNA二次構造予測を達成 --- 熱力学モデルと深層学習の効果的な組合せ,. 化学. 2021. 76. 7
Li J, Nakai K, Zheng Y, Sato K, Wong L. Introduction to Selected Papers from GIW2018. Journal of Bioinformatics and Computational Biology. 2018. 16. 6
青木言太, 土谷麻里子, 小坂威雄, 長谷純崇, 佐藤健吾, 水野隆一, 大家基嗣, 榊原康文. がん細胞株におけるderived RNAのプロファイル解析. 日本RNA学会年会要旨集. 2017. 19th
Ito Shino, Tanaka Yugaku, Sato Kengo, Ko Shigeru, Kano Yoshinobu, Sakakibara Yasubumi. RF-002 Construction of a question-answering program that automatically answers the medical licensing examination. 2015. 14. 2. 11-16

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Books (5)：

RNA Secondary Structure Prediction Based on Energy Models,
Springer Science+Business Media 2023 ISBN:9781071627679
Readings in Japanese Natural Language Processing
Stanford Univ Center for the Study 2016
バイオインフォマティクス入門
慶應義塾大学出版会 2015 ISBN:9784766422511
実験医学増刊「生命科学の最先端に役立つバイオデータベースとウェブツール総集編」
羊土社 2008
Grammatical Inference: Algorithms and Applications,
Springer 2006

Lectures and oral presentations (38)：

プライバシー保護技術を用いた遺伝子発現差異解析
(情報処理学会第73回バイオ情報学研究会 2023)
RNA secondary structure prediction using deep learning with thermodynamic integration
(RNA Nanotechnology (Gordon Research Conference) 2023)
Extending a deep learning-based RNA secondary structure prediction algorithm for RNA modifications
(情報処理学会第72回バイオ情報学研究会 2022)
熱力学モデルを統合した深層学習によるRNA二次構造予測
(第21回情報科学技術フォーラム(FIT2022) 2022)
Extending a deep learning-based RNA secondary structure prediction algorithm for RNA modifications
(第11回生命医薬情報学連合大会 (IIBMP 2022) 2022)

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Education (3)：

1997 - 2003 Keio University Graduate School of Science and Technology School of Science for Open and Environmental Systems
1995 - 1997 Keio University Graduate School of Science and Technology Department of Computer Science
1991 - 1995 Keio University Faculty of Science and Technology Department of Mathematics

Professional career (3)：

Bachelor of Science (Keio University)
Master of Science in Engineering (Keio University)
Ph.D. in Engineering (Keio University)

Work history (6)：

2022/04 - 現在 Tokyo Denki University School of System Design and Technology Department of Information System Engineering Professor
2011/04 - 2022/03 Keio University Department of Biosciences and Informatics, Faculty of Science and Technology Lecturer
2006/04 - 2015/03 National Institute of Advanced Industrial Science and Technology Computational Biology Research Center Researher Postdoc
2009/11 - 2011/03 University of Tokyo Department of Computational Biology, Graduate School of Frontier Sciences Lecturer
2006/04 - 2009/10 Japan Biological Informatics Consortium Researher Postdoc

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Committee career (19)：

2023/04 - 現在情報処理学会バイオ情報学研究会主査
2023/04 - 現在 IPSJ Transactions on Bioinformatics 編集委員長
2021/04 - 現在 IPSJ Transactions on Bioinformatics 副編集長
2021 - 現在 Genes (Basel) Section Editor
2021 - 現在 Frontiers in Genetics Associate Editor

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Awards (5)：

2020/09 - 日本バイオインフォマティクス学会第9回生命医薬情報学連合大会ポスター賞
2017/10 - 日本バイオインフォマティクス学会第6回生命医薬情報学連合大会ポスター賞
2016/10 - 日本バイオインフォマティクス学会第5回生命医薬情報学連合大会研究奨励賞
2013/03 - 情報処理学会山下記念研究賞
2008/12 - 日本バイオインフォマティクス学会 Oxford Jornals JSBi Prize

Association Membership(s) (8)：

The RNA Society of Japan , 日本分子生物学会 , IPSJ SIGBIO , International Society for Computational Biology , Japanese Society for Bioinformatics , Information Processing Society of Japan , Japan Society of Marmoset Research , 言語処理学会

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