- 2023 - 2028 Dispersal of modern homo sapiens in the Japanese archipelago during the last glacial
- 2022 - 2027 4万年のアジア人類史から読み解く「ヒト多様性のパラドックス」
- 2022 - 2026 アフリカに初めて出現した第一選択薬アルテミシニンへの耐性マラリア:蔓延機序の解明
- 2021 - 2025 A study for the construction and application of Jomon iPS cells
- 2022 - 2024 Elucidating the genetic characteristics that enabled migration to remote Oceania
- 2021 - 2024 Highly Sensitive Detection for HBV Driver Mutations and Construction of a PRS Model
- 2021 - 2024 新型コロナウイルス感染症からみたヒトの潜在的遺伝適応能
- 2021 - 2024 Introgression from archaic hominins into Oceania populations
- 2021 - 2023 Origin of the Basal Population of the Japanese Islands
- 2019 - 2023 International Joint Genome Epidemiology Study on Stress and Non-Communicable Diseases in Indonesia
- 2018 - 2023 デング熱重症化予測アルゴリズムの開発
- 2019 - 2021 核ゲノム配列情報に基づくヤポネシア人集団史モデルの構築
- 2018 - 2021 Population history of Japan
- 2017 - 2020 Genome analysis of Yayoi people; its relevance for the origin of modern Japanese
- 2016 - 2019 A molecular epidemiological study of the effects of individualization on stress and the development of depression in Indonesia
- 2014 - 2019 Development of genetic marker for artemisinin-resistant malaria: Field-genomics analysis
- 2016 - 2018 When was our skin color changed?
- 2014 - 2018 Polymorphisms associated with skin pigmentation in Oceaniac populations
- 2014 - 2017 Genome anthropology study for testing the Cold adaptation and Anti-Obesity hypothesis in East Asia
- 2014 - 2017 Genetic anthropology of skin functions and microbiome in Asian populations
- 2013 - 2016 Coevolution of human and plasmodium falciparum malaria
- 2013 - 2016 Polymorphisms associated with obesity/lipid metabolism/carbohydrate metabolism in Oceanic populations
- 2010 - 2016 Platform of large scale and high quality genomics and bioinformatics: Towards the advancement of genome sciences in academia
- 2013 - 2015 HLA遺伝子領域の多様性と正の自然選択
- 2013 - 2015 An exploratory study on the key molecules in Japanese autoimmune rheumatic diseases using genome and transcriptome analyses.
- 2011 - 2013 HLA遺伝子領域の多様性と自然選択の役割
- 2010 - 2012 A study on polymorphisms associated with obesity and lipid profile in the Oceanic populations
- 2008 - 2009 疾患関連変異探索のための遺伝統計学的解析法の開発とデング出血熱関連解析への応用
- 2005 - 2009 Establishment of the support system for SNP analyses and identification of disease-associated genes
- 2006 - 2007 自然選択がヒトゲノム多様性および連鎖不平衡構造に与える影響の解析
- 2006 - 2007 疾患関連変異探索のための遺伝統計学的解析法の開発とデング出血熱関連解析への応用
- 2004 - 2005 ヒトゲノム多様性と連鎖不平衡ブロックの解析
- 2004 - 2004 SNPの数理解析とSNP利用研究のための新規統計解析手法の開発
- 2002 - 2004 A genetic-ecological study of the risk foctors for lifestyle-related diseases in Oceanian populations
- 2003 - 2003 SNPの数理解析とSNPを用いた疾患感受性遺伝子探索法の開発
- 2002 - 2002 SNPの数理解析とSNP利用研究のための新規統計解析手法の開発
- 2000 - 2002 Studies on the clinical significance of TNFα upstream promoter region haplotypes.
- 1999 - 2001 STudies on subceptibility genes to autoimmune diseases using genomic approach
- 2000 - 2000 マイクロサテライト解析によるびまん性汎細気管支炎の主要感受性遺伝子座の推定
- 2000 - 2000 SNPの数理解析とSNP利用研究のための統計解析手法の開発
- 1999 - 2000 HLA遺伝子多型の数理解析に基づく渡来系弥生人の移住時期と規模の推定
- 1999 - 2000 Study on interactions between infectious diseases and host genetic factors in East Asia and Oceania
- 1998 - 1998 分子遺伝学的アプローチによるクローン病感受性遺伝子同定の試み
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