Rchr
J-GLOBAL ID:200901019405653975   Update date: Nov. 20, 2024

Shinoda Wataru

シノダ ワタル | Shinoda Wataru
Affiliation and department:
Research field  (2): Basic physical chemistry ,  Bio-, chemical, and soft-matter physics
Research keywords  (1): Molecular simulation, multiscale modeling, lipid membrane, biological membrane, self-assembly, liposome, lipid nanoparticles, drug delivery carrier, virus capsid, polymer materials, polymer electrolytes
Research theme for competitive and other funds  (8):
  • 2024 - 2029 Development of Applications of Engineered Lipid Particles
  • 2024 - 2027 膜透過の計算科学:膜モジュレータの作用と核酸透過機構の解明
  • 2024 - 2027 細胞膜をゆらす核酸医薬の膜透過機構の総合理解と膜透過学の創成
  • 2023 - 2026 Average orientation of lipid acyl chains in the domain structure of model membranes
  • 2021 - 2025 Molecular Dynamics of Intracellular Transport of Lipid Nanoparticles: Molecular mechanism of endosomal escape of nucleic acids
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Papers (163):
  • Yuichi Umegawa, Hiroshi Tsuchikawa, Wataru Shinoda, Michio Murata. NMR and molecular simulation studies on the structure elucidation of the amphotericin B ion channel using 13C and 19F labelling. Organic & Biomolecular Chemistry. 2024
  • Frederik Philippi, Maleen Middendorf, Keisuke Shigenobu, Yuna Matsuyama, Oriele Palumbo, David Pugh, Taku Sudoh, Kaoru Dokko, Masayoshi Watanabe, Monika Schönhoff, et al. Evolving better solvate electrolytes for lithium secondary batteries. Chemical Science. 2024. 15. 19. 7342-7358
  • Kunanon Chattrairat, Akira Yokoi, Min Zhang, Mikiko Iida, Kosuke Yoshida, Masami Kitagawa, Ayuka Niwa, Masatoshi Maeki, Takeshi Hasegawa, Takeshi Yokoyama, et al. Discrimination of extracellular miRNA sources for the identification of tumor-related functions based on nanowire thermofluidics. Device. 2024. 12. 100363-100363
  • Wenting Huo, Koji Miki, Huiying Mu, Takashi Osawa, Harumi Yamaguma, Yuuya Kasahara, Satoshi Obika, Yoshimasa Kawaguchi, Hisaaki Hirose, Shiroh Futaki, et al. Light-controllable cell-membrane disturbance for intracellular delivery. Journal of Materials Chemistry. B. 2024. 12. 17. 4138-4147
  • Yuichi Umegawa, Sho Kato, Sangjae Seo, Wataru Shinoda, Satoshi Kawatake, Shigeru Matsuoka, Michio Murata. Protein-lipid acyl chain interactions: Depth-dependent changes of segmental mobility of phospholipid in contact with bacteriorhodopsin. Biophysical chemistry. 2024. 308. 107204-107204
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MISC (65):
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Lectures and oral presentations  (2):
  • Simulating Endosomal Escape of Lipid Nanoparticles
    (The 6th International Conference on Molecular Simulation (ICMS2023) 2023)
  • Coarse Grained Molecular Dynamics Study on Endosomal Escape of dsDNA Encapsulated in Lipid Nanoparticles using the SPICA Force Field
    (CECAM workshop: Macromolecular complexes: from ab initio and integrative modelling to functional dynamics 2023)
Education (1):
  • 1995 - 1998 Tokyo Institute of Technology
Professional career (1):
  • 博士(理学) (東京工業大学)
Work history (7):
  • 2021/10 - 現在 Okayama University The Research Institute for Interdisciplinary Science Professor
  • 2014/01 - 2021/09 Nagoya University Graduate School of Engineering Associate Professor
  • 2001/04 - 2013/12 National Institute of Advanced Industrial Science and Technology
  • 2005/04 - 2007/03 University of Pennsylvania Department of Chemistry Visiting Scholar
  • 2000/04 - 2001/03 National Institute of Materials and Chemical Research
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Association Membership(s) (8):
分子シミュレーション学会 ,  日本化学会 ,  理論化学会 ,  American Chemical Society ,  溶液化学研究会 ,  JAPAN SOCIETY FOR MOLECULAR SCIENCE ,  THE SOCIETY OF POLYMER SCIENCE, JAPAN ,  THE BIOPHYSICAL SOCIETY OF JAPAN
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