Rchr
J-GLOBAL ID：200901032402919970
Update date: Oct. 30, 2024
Onami Shuichi
オオナミ シュウイチ | Onami Shuichi
Affiliation and department：
Job title：
Team Leader
Other affiliations (6)：
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RIKEN
TRIP Headquarters
Team Leader
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RIKEN
Information R&D and Strategy Headquaters
Unit Leader
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Kobe University
Graduate School of Medicine
Visiting Professor
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Osaka University
Graduate School of Frontier Biosciences
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Osaka University
Institute for Open and Trasdiciplinary Research Initiatives
Invited Professor
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Homepage URL (2)：
http://www.riken.jp/research/labs/bdr/dev_dyn/
,
http://www.riken.jp/en/research/labs/bdr/dev_dyn/
Research field (3)：
Biological, health, and medical informatics
, Systems genomics
, Biophysics
Research theme for competitive and other funds (8)：
- 2022 - 2028 Advanced Bioimaging Support
- 2022 - 2027 Development of a global data sharing system for bioimaging data
- 2021 - 2025 虹色発光線虫に基づく生きた総合病院・環境診断センターの創成
- 2019 - 2024 Dynamic epithelial-mesenchymal interactions in the emergence of integumentary diversity
- 2018 - 2023 Development of Informatics technologies for identification and analysis of singularity cells
- 2015 - 2020 Data-driven analysis of the mechanism of animal development
- 2015 - 2018 Expansion of the informational technologies for mutual use of measurement data in biological science
- 2005 - 2009 Analysis of developmental mechanisms based on functional genomic information of the nematode C. elegans
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Papers (71)：
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Soya Shinkai, Shuichi Onami, Tomoshige Miyaguchi. Generalized Langevin dynamics for single beads in linear elastic networks. Physical Review E. 2024. 110. 4
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Yuki Yamagata, Tsubasa Fukuyama, Shuichi Onami, Hiroshi Masuya. Prototyping an Ontological Framework for Cellular Senescence Mechanisms: A Homeostasis Imbalance Perspective. Scientific Data. 2024
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Taro Ichimura, Taishi Kakizuka, Yuki Sato, Keiko Itano, Kaoru Seiriki, Hitoshi Hashimoto, Hiroya Itoga, Shuichi Onami, Takeharu Nagai. Volumetric trans-scale imaging of massive quantity of heterogeneous cell populations in centimeter-wide tissue and embryo. 2024
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Bajcsy, Peter, Bhattiprolu, Sreenivas, Boerner, Katy, Cimini, Beth A., Collinson, Lucy, Ellenberg, Jan, Fiolka, Reto, Giger, Maryellen, Goscinski, Wojtek, Hartley, Matthew, et al. Enabling Global Image Data Sharing in the Life Sciences. arXiv. 2024
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Bialy, Nikki, Alber, Frank, Andrews, Brenda, Angelo, Michael, Beliveau, Brian, Bintu, Lacramioara, Boettiger, Alistair, Boehm, Ulrike, Brown, Claire M.., Maina, Mahmoud Bukar., et al. Harmonizing the Generation and Pre-publication Stewardship of FAIR Image Data. arXiv. 2024
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MISC (54)：
Books (12)：
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マウス初期胚全細胞ライブイメージングの達成 In 実験医学別冊 最強のステップUPシリーズ ライトシート顕微鏡実践ガイド組織透明化&ライブイメージング
2023 ISBN:9784758122689
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In 実験医学別冊 最強のステップUPシリーズ ライトシート顕微鏡実践ガイド組織透明化&ライブイメージング
2023 ISBN:9784758122689
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空間オミクス解析スタートアップ実践ガイド : 最新機器の特徴と目的に合った選び方、データ解析と応用例を学び、シングルセル解析の一歩その先へ!
羊土社 2023 ISBN:9784758122610
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バイオ画像解析手とり足とりガイド バイオイメージと定量データのデータベース.
羊土社 2014 ISBN:9784758108157
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生命のビッグデータ利用の最前線 バイオイメージ・インフォマティクスが切り開く新しい生命科学の可能性
シーエムシー出版 2014 ISBN:9784781305370
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Lectures and oral presentations (298)：
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Polymer physics of Hi-C data reveals linear viscoelasticity of the 3D genome
(RIKEN International Symposium on Nuclear Structure and Function 2024 2024)
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SSBD: Global sharing of bioimaging data
(RIKEN BDR Symposium 2024 "Time Across Scales: Development, Homeostasis and Aging" 2024)
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ELEPHANT: an image analysis tool for 2D/3D cell tracking using incrementally trainable deep learning
(RIKEN BDR Symposium 2024 "Time Across Scales: Development, Homeostasis and Aging" 2024)
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Eggshell functions in C. elegans embryonic development
(RIKEN BDR Symposium 2024 "Time Across Scales: Development, Homeostasis and Aging" 2024)
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Theory of viscoelasticity of chromatin and its surrounding environment
(RIKEN BDR Symposium 2024 "Time Across Scales: Development, Homeostasis and Aging" 2024)
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Education (2)：
- - 1998 The Graduate University for Advanced Studies School of Life Science
- - 1994 The University of Tokyo Department of Veterinary Medical Science
Professional career (1)：
- Ph.D. (The Graduate University for Advanced Studies)
Work history (17)：
- 2024/04 - 現在 RIKEN TRIP Headquarters Research DX Team Team Leader
- 2024/04 - 現在 Kobe University Graduate School of Medicine Visiting Professor
- 2021/06 - 現在 Osaka University Institute for Open and Transdisciplinary Research Initiatives, OTRI Invited Professor
- 2021/04 - 現在 RIKEN Information R&D and Strategy Headquarters, Infrastructure Research and Development Division, Life Science Data Sharig Unit Unit Leader
- 2019 - 現在 特定非営利活動法人システムバイオロジー研究機構 理事
- 2018 - 現在 RIKEN
- 2017 - 現在 Ritsumeikan University Graduate School of Life Sciences
- 2016 - 現在 大阪大学 大学院生命機能研究科 招へい教授
- 2022/08 - 2024/03 RIKEN Cluster for Pioneering Research Research DX Foundation Team Team leader
- 2016 - 2024/03 Kobe University Graduate School of System Informatics Department of Computational Science
- 2021/08 - 2022/07 RIKEN Cluster for Science, Technology and Innovation Hub Deputy Director
- 2020/09 - 2021/03 RIKEN Head Office for Information Systems and Cybersecurity, Life Science Data Sharing Unit Unit Leader
- 2011 - 2018 RIKEN
- 2001 - 2012 特定非営利活動法人システムバイオロジー研究機構 理事
- 2002 - 2003 大学助教授(有期・文部科学省「システム生物学者育成プログラム」)(大学院理工学研究科)
- 2002 - 2002 大学助教授(有期・文部科学省「システム生物学者育成プログラム」)(大学院理工学研究科)
- 2001 - 2001 大学特別招聘助教授(非常勤)(理工学部)
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Awards (2)：
- 2023/07 - The Japanese Society for Artificial Intelligence JSAI Annual Conference Award
- 2021/07 - The Japanese Society for Artificial Intelligence JSAI Annual Conference Award (2021) Ontology development for building a knowledge base in the life science and structuring knowledge for elucidating the COVID-19 mechanism
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