YING BEIWEN

インベイウェン | YING BEIWEN

Affiliation and department：
Job title： Associate Professor
Homepage URL (1)： https://www.u.tsukuba.ac.jp/~ying.beiwen.gf/index.html

Research field (7)： Biological, health, and medical informatics , Computational science , Ecology and environmental science , Applied microbiology , Evolutionary biology , Systems genomics , Molecular biology

Research keywords (7)： Bioinformatics , Machine learning , Cell culture , Gene expression , Experimental evolution , Genome reduction , Bacterial growth

Research theme for competitive and other funds (11)：

2021 - 2023 細胞培養のデータ駆動型最適化の基盤技術の開発
2021 - 2022 ラクトバチルス菌検査キットの培養速度の向上
2019 - 2022 ゲノム縮小と増殖速度の相関の機構解明
2020 - 2021 細胞培養(培地)の最適化プラットフォームの開発
2014 - 2016 E. coli cells growing under starvation

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Papers (70)：

HITOMI, Kenya, ISHII, Yoichiro, YING, BEIWEN. Diversity for commonality in the evolutionary changes of the reduced genome to regain the growth fitness. eLife. 2024
ZHANG, Shuyang, AIDA, Honoka, YING, BEIWEN. Employing Active Learning in Medium Optimization for Selective Bacterial Growth. Applied Microbiology. 2023. 3. 4. 1355-1369
HASHIZUME, Takamasa, YING, BEIWEN. Challenges in developing cell culture media using machine learning. BIOTECHNOLOGY ADVANCES. 2023
ZHANG, Shuyang, AIDA, Honoka, YING, BEIWEN. Active learning for medium optimization for selective bacterial culture. bioRxiv. 2023
AIDA, honoka, YING, BEIWEN. Efforts to Minimise the Bacterial Genome as a Free-Living Growing System. BIOLOGY-BASEL. 2023. 12. 9

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MISC (2)：

Kashiwagi Akiko, Sakurai Takahiro, Tsuru Saburo, Ying Bei-Wen, Mori Kotaro, Yomo Tetsuya. FM-P1 Construction of Escherichia coli gene expression level perturbation collection(Section VIII Fermentation and Microbial Technology). Journal of bioscience and bioengineering. 2009. 108. 1. S118-S119
Tsuru Saburo, Ying Bei-Wen, Mori Kotaro, Ushioda Junya, Kashiwagi Akiko, Yomo Tetsuya. 2P-143 Stochastic gene expression induced population selection promotes adaptation to nutrient depletion(Cell biology,The 47th Annual Meeting of the Biophysical Society of Japan). Seibutsu Butsuri. 2009. 49. 0

Patents (5)：

培養環境判定システム、培養装置、要求取得装置及びプログラム
培養環境判定装置、培養システム、培養環境判定方法、培養方法、及びプログラム
微生物培養用合成培地及び微生物の培養方法
培養環境判定装置、培養環境判定方法、及びプログラム
リボソームディスプレイ

Books (4)：

Stress and Environmental Regulation of Gene Expression and Adaptation in Bacteria
2016 ISBN:9781119004882
Advances in Applied Biotechnology
2012
Protein Engineering Handbook
2009
Cell-Free Expression
2007

Lectures and oral presentations (74)：

大腸菌増殖を特徴づける遺伝的要件と化学環境の横断的探索
(日本ゲノム微生物学会第18回大会)
Compensation of medium composition to genome reduction
(日本ゲノム微生物学会第18回大会)
A preliminary analysis of the growth curves of bacterial strains knocked out by a single gene
(日本ゲノム微生物学会第18回大会)
Time-saving medium development for improved cell culture
(JAACT2023)
Medium optimization for mammalian cells using machine learning
(JAACT2023)

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Education (1)：

2000 - 2005 The University of Tokyo Graduate School of Integrative Sciences

Professional career (1)：

PhD. (Biosciences) (The University of Tokyo)

Work history (4)：

2013 - 現在 University of Tsukuba Associate Professor
2007 - 2013 Osaka University Assistant Professor, Associate Professor
2006 - 2007 Centre national de la recherche scientifique (CNRS) Postdoc
2005 - 2006 The University of Tokyo Research Fellow

Committee career (5)：

2023 - 現在 Biology Editorial Board Member
2020 - 現在 BMC Microbiology Editorial Board Member
2019 - 現在 Scientific Reports (Nature Publishing Group) Editorial Board Member
2018 - 現在 Frontiers in Microbiology Associate Editor
2015 - 2021 Society of Genome Microbiolgy, Japan Councilor

Association Membership(s) (3)：

JAPAN SOCIETY FOR BIOSCIENCE, BIOTECHNOLOGY, AND AGROCHEMISTRY , JAPANESE SOCIETY OF MICROBICAL ECOLOGY , Society of Genome Microbiolgy, Japan

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