Oda Masayuki

オダマサユキ | Oda Masayuki

Affiliation and department：
Job title： Professor
Homepage URL (2)： https://kpu-biophyschem.com/ , https://kpu-biophyschem.com/english/

Research field (3)： Bio-, chemical, and soft-matter physics , Biophysics , Structural biochemistry

Research keywords (7)： biothermodynamics , signal transduction , antibody , enzyme , structure function relationship , protein , biomolecular Interaction

Research theme for competitive and other funds (16)：

2022 - 2025 静的局所環境の学習によるタンパク質動的構造情報の抽出
2021 - 2024 クチナーゼCut190のCa2+結合に伴う動的構造変化とPET分解分子機構の解明
2020 - 2023 耐熱性放線菌由来PET分解酵素による廃棄PETのケミカルリサイクルの実用化
2020 - 2023 Complex structure and affinity prediction among cancer vaccine peptides and immune related proteins
2020 - 2022 クラゲコラーゲンの3Dバイオインク利用

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Papers (148)：

Nobutaka Numoto, Fumiya Kondo, Gert-Jan Bekker, Zengwei Liao, Mitsuaki Yamashita, Akira Iida, Nobutoshi Ito, Narutoshi Kamiya, Masayuki Oda. Structural dynamics of the Ca2+-regulated cutinase towards structure-based improvement of PET degradation activity. International Journal of Biological Macromolecules. 2024. 281. 136597-136597
Masataka Kuroda, Yuuya Kasahara, Masako Hirose, Harumi Yamaguma, Masayuki Oda, Chioko Nagao, Kenji Mizuguchi. Construction of a Tm-value prediction model and molecular dynamics study of AmNA-containing gapmer antisense oligonucleotide. Molecular Therapy - Nucleic Acids. 2024. 35. 3. 102272-102272
Mutsumi Yoshida, Yuya Hanazono, Nobutaka Numoto, Satoshi Nagao, Saaya Yabuno, Yumi Kitagawa, Hiroshi Sekiguchi, Nobutoshi Ito, Takachika Azuma, Masayuki Oda. Affinity-matured antibody with a disulfide bond in H-CDR3 loop. Archives of Biochemistry and Biophysics. 2024. 758. 110068-110068
Masayuki Oda. Analysis of the Structural Dynamics of Proteins in the Ligand-Unbound and -Bound States by Diffracted X-ray Tracking. International Journal of Molecular Sciences. 2023. 24. 18. 13717-13717
Gert-Jan Bekker, Nobutaka Numoto, Maki Kawasaki, Takahiro Hayashi, Saaya Yabuno, Yuko Kozono, Takeyuki Shimizu, Haruo Kozono, Nobutoshi Ito, Masayuki Oda, et al. Elucidation of binding mechanism, affinity and complex structure between mWT1 tumor-associated antigen peptide and HLA-A*24:02. Protein Science. 2023

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MISC (2)：

古賀舞子, 真柳浩太, 北井麻希, 村上明一, 東隆親, 織田昌幸. 抗原・抗体複合体の直接観察抗原の大きさ、結合価、及び抗体の結合親和性の影響(Direct observation of antigen-antibody complex: Effects of antigen size, valence, and binding affinity of antibody). 生物物理. 2007. 47. Suppl.1. S120-S120
ODA Masayuki. Thermodynamic Analyses of Specific and Non-Spectific DNA Recognition Mechanisms by Transcriptional Factor c-Myb. Seibutsu Butsuri. 1999. 39. 5. 301-305

Books (7)：

熱量測定・熱分析ハンドブック
丸善出版 2020 ISBN:9784621305072
食品ハイドロコロイドの開発と応用II
シーエムシー出版 2015
熱量測定・熱分析ハンドブック
丸善 2010
ファルマシア
2008
等温滴定熱測定
蛋白質科学プロトコール 2008

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Lectures and oral presentations (44)：

エンド-1,3-β-グルカナーゼ触媒ドメインの機能構造解析
(日本農芸化学会大会講演要旨集(Web) 2017)
Generation of single-chain Fv antibody against (4-hydroxy-3-nitrophenyl)acetyl and analysis of its structural dynamics
(PROTEIN SCIENCE 2015)
Structural and thermodynamic analysis of co-stimulation receptor CD28 phosphopeptide interactions with Grb2, Gads, and PI3-kinese SH2 domains
(PROTEIN SCIENCE 2015)
温度変化実験により明らかとなったc-Myb DNA結合ドメイン構造揺らぎの特性
(日本蛋白質科学会年会プログラム・要旨集 2014)
1P027 Insight into the antigen binding motion of germline and affinity-matured antibodies(Protein: Structure & Function,Poster,The 52th Annual Meeting of the Biophysical Society of Japan(BSJ2014))
(Seibutsu Butsuri 2014)

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Education (2)：

1989 - 1991 Kyoto University Graduate School of Science
1985 - 1989 Kyoto University Faculty of Science

Professional career (1)：

Ph D

Work history (11)：

2018/04 - 現在 Kyoto Prefectural University Graduate School of Life and Environmental Sciences Professor
2020/04 - 2021/03 山陽小野田市立山口東京理科大学非常勤講師
2019/04 - 2020/03 京都工芸繊維大学非常勤講師
2008/04 - 2018/03 Kyoto Prefectural University Graduate School of Life and Environmental Sciences Associate Professor
2015/04 - 2016/03 名古屋工業大学非常勤講師

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Committee career (9)：

2020/09 - 現在日本生化学会評議員
2018/03 - 現在 Biomolecular Interaction Research Association (BIRA) president
2020/10 - 2022/09 日本熱測定学会委員
2007 - 2021 日本生物物理学会分野別編集委員
2018/10 - 2019/09 日本熱測定学会編集委員長、編集幹事

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Awards (2)：

2022 - Biophysics and Physicobiology Editors' Choice Award
2006 - The Japan Society of Thermal Analysis and Calorimetry Encourage Award

Association Membership(s) (4)：

The Japan Society for Bioscience, Biotechnology, and Agrochemistry , The Japan Society of Calorimetry and Thermal Analysis , The Biophysical Society of Japan , The Japanese Biochemical Society

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