- 2016 - 2019 Enhanced structural sampling for allosteric drug design
- 2016 - 2019 Mechanism of signal transduction regulated by the interactions to cell membrane
- 2011 - 2015 The role of the encounter complexes studied by molecular simulations of the protein complex formation processes.
- 2009 - 2010 タンパク質側鎖の平衡揺らぎと基質結合に伴う応答的運動
- 2008 - 2010 Identification of the relationship between protein structural changes and ligand binding on the basis of 3D protein structures
- 2007 - 2008 分子シミュレーションによる膜タンパク質の機能的ダイナミクスの研究
- 2003 - 2007 分子シミュレーションによる蛋白質フォールディング・分子認識機構の解明
- 2005 - 2006 分子シミュレーションによる膜タンパク質の機能的ダイナミクスの研究
- 2002 - 2006 P型イオンポンプによる能動輪送機構の構造的解明
- 2001 - 2004 Prediction of structure and function of protein complexes
- 2001 - 2004 水チャネルの選択性とその制御機構の解明
- 2000 - 2004 Decoding of genome function and evolution based on the 3D structures of proteins
- 2000 - 2004 Structural and Informatics Basis of Channel Protein Interactions
- 2002 - 2003 Study of Vibrational Energy Transfer in Proteins
- 2000 - 2002 the maintenance and circulation of protein higher-order structural information and the evaluation of prediction information
- 2001 - 2001 蛋白質フォールディング研究の企画調査
- 1999 - 2001 Energy Transfer in a Protein Molecule: From Chemical Reaction to Structural Change
- 2000 - 2000 Free-R因子を上げずにより詳細な蛋白質モデルを構築するための結晶構造精密化法
- 1999 - 1999 プロテオーム時代の計算情報生物学
- 1997 - 1999 Program System for Protein Electron Crystallography
- 1995 - 1999 Administration of researches on principles of protein architecture
- 1995 - 1999 Protein structure, comparison, prediction, and design
- 1997 - 1998 Administration of reseaches on principles of protein architecture
- 1995 - 1998 タンパク質立体構造の安定性・ダイナミックス・折れたたみ機構
- タンパク質立体構造に関する理論的研究
- Theoretical Study of Protein Structure
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