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J-GLOBAL ID：200902256426936069   Reference number：06A0686534

A Graph Theoretical Approach for Analysis of Protein Flexibility Change at Protein Complex Formation

蛋白質複合体形成での蛋白質柔軟性変化解析のためのグラフ理論アプローチ

Author (9)： DEL CARPIO M.Carlos A. (Tohoku Univ., Sendai, JPN) ,  SHAIKH Abdul Rajjak (Tohoku Univ., Sendai, JPN) ,  ICHIISHI Eichiro (Tohoku Univ., Sendai, JPN) ,  KOYAMA Michihisa (Tohoku Univ., Sendai, JPN) ,  KUBO Momoji (Tohoku Univ., Sendai, JPN) ,  KUBO Momoji (JST-PRESTO, Saitama, JPN) ,  NISHIJIMA Kazumi (Tohoku Univ., Sendai, JPN) ,  NISHIJIMA Kazumi (Mochida Pharmaceutical Co. Ltd., Tokyo, JPN) ,  MIYAMOTO Akira (Tohoku Univ., Sendai, JPN)
Material： Genome Informatics Series  (Genome Informatics)
Volume： 16  Issue： 2  Page： 148-160  Publication year： 2005 
JST Material Number： L4348A  ISSN： 0919-9454  Document type： Proceedings
Article type： 原著論文  Country of issue： Japan (JPN)  Language： ENGLISH (EN)

Thesaurus term： *protein complex ,...
Semi thesaurus term： HIV protease

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JST classification (1)： Proteins and peptides in general  (EB03010N)

Reference (17)：

• [1] Brasseur, R., Differentiation of lipid-associating helices by use of three dimensional molecular hydrophobicity potential calculations, J. Biol. Chem., 266: 16120-16127, 1998.
• [2] Del Carpio, C. A., Ichiishi, E., Yoshimori, A., and Yoshikawa, T., MIAX: A new paradigm for modeling boiomacromolecular interactions and complex formation in condensed phases, PROTEINS: Structure, Function and Genetics, 48: 696-732, 2002.
• [3] Del Carpio, C. A., Peissker, T, Yoshimori, A., and Ichiishi, E., Docking Unbound Proteins with MIAX: A novel algorithm for protein-protein soft docking, Genome Inform., 14: 238-249, 2003.
• [4] Fernandez-Recio, J., Abagyan, R., and Totrov, M., Improving CAPRI predictions: Optimized desolvation for rigid-body docking, PROTEINS: Structure, Function, and Bioinformatics, 60: 308-313, 2005.
• [5] Fischer, D., Lin, S. L., Wolfson, L., and Nussinov, R., A geometry-based suite of molecular docking processes, J. Mol. Biol., 248: 459-477, 1995.

Terms in the title (4)： 蛋白質複合体 ,  蛋白質 ,  解析 ,  グラフ理論