- 2016 - 2021 Platform for Advanced Genome Science
- 2013 - 2016 Development of the integrated technologies to analyze genomic bases of individuality
- 2010 - 2016 Platform of large scale and high quality genomics and bioinformatics: Towards the advancement of genome sciences in academia
- 2010 - 2016 Genetic Bases for the Evolution of Complex Adaptive Traits
- 2008 - 2011 Inference-based Hypothesis-finding and its Application to Systems Biology
- 2005 - 2009 Comparative Genomics Toward Understanding Genomic Bases of Evolution and Bio-Diversity : Support Groups
- 2005 - 2009 Highly Accurate Comparative Genome Mapping and Structural Genomics
- 2004 - 2009 Comprehensive genomics towards the frontiers of biology and med
- 2004 - 2009 Comparative Genomics Toward Understanding Genomic Bases of Evolution and Bio-Diversity
- 2004 - 2009 Systems genomics towards system-level understanding of life
- 2002 - 2004 Primate Comparative Genome Analysis and Study on Mechanisms of Human Evolution
- 2000 - 2004 Evolution and Diversity in the system of development and differentiation
- 1996 - 1997 分裂酵母を用いた、細胞機能の系統的解析システムの開発研究
- 1995 - 1997 Japan-French Joint Research on Genome
- 1995 - 1995 GTP結合蛋白質の翻訳後修飾による機能発現制御メカニズムに関する研究
- 1994 - 1994 GTP結合蛋白質の翻訳後修飾による機能発現制御メカニズムに関する研究
- 1993 - 1993 GTP結合蛋白質のイソプレニル化による機能制御メカニズムに関する研究
- 1992 - 1993 Research on the Mechanisms of Intra-cellular Transportation and Functional Regulation of GTP Binding Proteins Using Schizosaccharomyces pombe
- 1990 - 1990 染色体のバシド構造に依存しないマッピング技術の開発と応用に関する研究
- 1990 - 1990 B型肝炎ウイルスの増殖に関わる因子の研究
- 1989 - 1989 B型肝炎ウイルスの増殖・組込みと肝癌発生との関連
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