Rchr
J-GLOBAL ID:201101036451836391
Update date: Nov. 04, 2024
Urakubo Hidetoshi
ウラクボ ヒデトシ | Urakubo Hidetoshi
Affiliation and department:
Job title:
Associate professor
Homepage URL (1):
https://github.com/urakubo
Research field (4):
Neuroscience - general
, Biological, health, and medical informatics
, Computational science
, Basic brain sciences
Research keywords (7):
Neuroscience
, Systems biology
, Computational neuroscience
, NEURON simulator
, CaMKII
, STDP
, Computer simulation
Research theme for competitive and other funds (9):
- 2020 - 2026 Spatiotemporal dynamics of molecules in sub-synaptic space for learning and memory (Head: Yasunori Hayashi).
- 2020 - 2024 Derivation of spatial rules of hetero-synaptic plasticity using the simulation of dendritic reaction-diffusion simulation.
- 2021 - 2023 Study of intercellular nuclear migration in meiosis of higher plants: three-dimensional ultrastructural analyses, whole organ immunostaining and live-cell imaging
- 2020 - 2022 GPU-based simulation of Ca2+ dynamics within morphologically realistic neuronal dendrites.
- 2020 - 2021 Simulation of intracellular signaling based on morphologically-realistic neuronal dendrites.
- 2019 - 2020 Development of an EM-based morphometric analysis plugin and its application to spine Ca2+ simulation.
- 2017 - 2020 Integrative modeling for mechanisms and functions for synaptic plasticity in emotion.
- 2014 - 2018 Implementation of biomolecule-based memory system in the brain.
- 2011 - 2014 Reconstitution experiment and computational modeling of CaMKII phosphorylation for synaptic plasticity.
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Papers (25):
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Takayuki Onai, Noritaka Adachi, Hidetoshi Urakubo, Fumiaki Sugahara, Toshihiro Aramaki, Mami Matsumoto, Nobuhiko Ohno. Ultrastructure of the lamprey head mesoderm reveals evolution of the vertebrate head. iScience. 2023. 108338-108338
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Sergey Mursalimov, Mami Matsumoto, Hidetoshi Urakubo, Elena Deineko, Nobuhiko Ohno. Unusual nuclear structures in male meiocytes of wild-type rye as revealed by volume microscopy. Annals of Botany. 2023. mcad107
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Sehyung Lee, Hideaki Kume, Hidetoshi Urakubo, Haruo Kasai, Shin Ishii. Tri-view Two-photon Microscopic Image Registration and Deblurring with Convolutional Neural Networks. Neural networks. 2022. 152. 57-69
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Hidetoshi Urakubo, Sho Yagishita, Haruo Kasai, Yoshiyuki Kubota, Shin Ishii. The critical balance between dopamine D2 receptor and RGS for the sensitive detection of a transient decay in dopamine signal. PLOS Computational Biology. 2021. 17. 9. e1009364-e1009364
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Laxmi Kumar Parajuli, Hidetoshi Urakubo, Ai Takahashi-Nakazato, Roberto Ogelman, Hirohide Iwasaki, Masato Koike, Hyung-Bae Kwon, Shin Ishii, Won Chan Oh, Yugo Fukazawa, et al. Geometry and the organizational principle of spine synapses along a dendrite. eNeuro. 2020
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MISC (26):
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Hidetoshi Urakubo, Akiya Watakabe, Ken Nakae, Shin Ishii, Kenji Doya. Advances in micro, meso, and macroscopic connectomes. Kaibogaku Zasshi / Acta anatomica Nipponica. 2022. 97. 2. 41-44
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Hidetoshi Urakubo. Memory and dopamine: a new computational model. Clinical neuroscience. 2022. 40. 4. 534-536
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Hidetoshi Urakubo, Yoshiyuki Kubota. Information Technologies for 3D Reconstruction of Neuronal Circuits Based on Volumetric Electron Microscopic Images. KENBIKYO. 2020. 55. 3. 120-124
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中江健, 浦久保秀俊, 東広志, 田中康裕, 島崎秀昭, 尾藤晴彦, 石井信. 2019 年度時限研究会 システム神経科学スプリングスクール 2019 (SNSS2019) 実施報告書. 日本神経回路学会誌. 2019. 26. 3. 99-103
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Hidetoshi Urakubo. Software for large-scale neural simulation: NEURON and NEST. The brain & neural networks. 2015. 22. 3. 133-144
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Professional career (1):
- Ph.D (Univresity of Tokyo)
Work history (6):
- 2023/01 - 現在 Fujita Health University School of Medicine, Faculty of Medicine Associate professor
- 2023/01 - 2023/03 National Institute for Physiological Sciences Section of Electron Microscopy, Supportive Center for Brain Research Associate professor (Adjunct)
- 2020/04 - 2022/12 National Institute for Physiological Sciences (NIPS) Division of Cerebral Circuitry Project Assistant Professor
- 2012/04 - 2020/03 Kyoto University, Graduate School of Informatics, Department of Systems Science Project Research Associate
- 2007/04 - 2012/03 University of Tokyo, Department of Biophysics and Biochemistry, Project Research Associate
- 2003/04 - 2007/03 University of Tokyo, Department of Biophysics and Biochemistry, Postdoctral Fellow
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Committee career (1):
- 2023/08 - 現在 Frontiers in Computational Neuroscience Review Editor
Awards (1):
- 2015/09 - Japanese Neural Network Society (JNNS) Treatise award
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