Adachi Shun

アダチシュン | Adachi Shun

Affiliation and department：

Research field (5)： Evolutionary biology , Ecology and environmental science , Cell biology , Molecular biology , Genetics

Research keywords (20)： speciation , reproductive isolation , community ecology , neutral theory , reaction-diffusion system , cell cycle , chromosome segregation , DNA repair , DNA replication , genome rearrangement , polyploidy , cell-cell communication , Sop system , MukB , topoisomerase , mass spectrometry , cellular slime mold , budding yeast , Escherichia coli , F plasmid

Research theme for competitive and other funds (4)：

2012 - 2013 Investigation of neurtal theory and adaptive evolution with cellular slime molds in wild.
2010 - 2010 Elucidation of intrinsic postzygotic reproductive isolation mechanisms in Saccharomyces species.
2008 - 2010 Elucidation for roles of localization-oscillating protein network on chromosome & plasmid segregation in Escherichia coli.
2005 - 2008 Elucidation of molecular mechanisms underlying chromosome & plasmid segregation in Escherichia coli.

Papers (16)：

Takaaki Koma, Masaru Yokoyama, Osamu Kotani, Naoya Doi, Nina Nakanishi, Hayato Okubo, Shun Adachi, Akio Adachi, Hironori Sato, Masako Nomaguchi. Species-Specific Valid Ternary Interactions of HIV-1 Env-gp120, CD4, and CCR5 as Revealed by an Adaptive Single-Amino Acid Substitution at the V3 Loop Tip. Journal of Virology. 2021. 95. e02177-20
Takaaki Koma, Shun Adachi, Naoya Doi, Akio Adachi, Masako Nomaguchi. Toward Understanding Molecular Bases for Biological Diversification of Human Coronaviruses: Present Status and Future Perspectives. Frontiers in Microbiology. 2020. 11. Article 2016
Shun Adachi, Takaaki Koma, Naoya Doi, Masako Nomaguchi, Akio Adachi. Commentary: Origin and evolution of pathogenic coronaviruses. Frontiers in Immunology. 2020. 11. 811-811
Masako Nomaguchi, Naoya Doi, Tomoya Yoshida, Takaaki Koma, Shun Adachi, Hirotaka Ode, Yasumasa Iwatani, Masaru Yokoyama, Hironori Sato, Akio Adachi. Production of HIV-1 vif mRNA Is Modulated by Natural Nucleotide Variations and SLSA1 RNA Structure in SA1D2prox Genomic Region. FRONTIERS IN MICROBIOLOGY. 2017. 8. 2542
Shun Adachi. Rigid geometry solves "curse of dimensionality" effects in clustering methods: An application to omics data. PLOS ONE. 2017. 12. 6. e0179180

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MISC (9)：

Shun Adachi. How could species be defined?. 2023
Shun Adachi, Yasuhiro Murakawa, Sota Hiraga. Involvement of SecA, SecY and AcpP in chromosome partition of Escherichia coli. GENES & GENETIC SYSTEMS. 2014. 89. 6. 304-304
Shun Adachi. Different community dynamics depending on the levels of biological hierarchies in Eastern Japanese Dictyostelids. GENES & GENETIC SYSTEMS. 2012. 87. 6. 398-398
Partition mechanisms of plasmids and bacterial chromosomes. Protein, nucleic acid and enzyme. 2008. 53. 13. 1732-1738
Sota Hiraga, Shun Adachi. Partition mechanism of F plasmid as a reaction diffusion system. PLASMID. 2007. 57. 2. 199-200

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Lectures and oral presentations (30)：

Rigid geometry solves “curse of dimensionality” effects: an application to proteomics
(Proceedings of the 1st International Symposium of the Kyoto Biomolecular Mass Spectrometry Society 2017)
リジッド幾何学がデータ解析を「次元の呪い」から解放する
(生命情報科学若手の会第8回研究会 2016)
種における排他的優占モードとカオスモードの識別
(日本進化学会第18回東京大会 2016)
Discrimination of Domination Mode and Chaotic Mode in Species
(Unifying Ecology Across Scales (Gordon Research Seminar/Gordon Research Conference) 2016)
種における排他的優占モードとカオスモードの識別
(第63回日本生態学会大会 2016)

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Education (4)：

2003 - 2008 Kyoto University Graduate School of Biostudies Division of Systemic Life Science
1998 - 2003 Kyoto University Faculty of Science Science Course
1995 - 1998 St. Viator Rakusei Senior High School General Course
- 1995 St. Viator Rakusei Junior High School

Professional career (1)：

PhD (Life Science) (Kyoto University)

Work history (13)：

2018/04 - 2022/03 Kansai Medical University Department of Microbiology Research Fellow
2015/12 - 2017/03 Kyoto University Center for Anatomical, Pathological and Forensic Medical Researches, Graduate School of Medicine Program-Specific Researcher
2015/06 - 2016/03 Tokushima University Faculty of Medicine Part-time Lecturer
2012/06 - 2015/05 The University of Tokushima Graduate School Institute of Health Biosciences Assistant Professor
2011/09 - 2012/05 Research Organization of Information and Systems National Institute of Genetics Project Research Fellow

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Committee career (3)：

2021/04 - 現在 Frontiers in Virology Review Editor
2019/05 - 現在 Ecological Modelling Editorial Advisory Board
2011/09 - 現在 Frontiers in Microbiology Review Editor

Awards (3)：

2019/10 - The International Society for Ecological Modelling “Outstanding Reviewer Award”
2006/10 - The Genetics Society of Japan Best Papers Award Interaction network system of oscillation proteins acting for Escherichia coli chromosome organization
2004/10 - The Genetics Society of Japan Best Papers Award Dynamics of chromosome in E. coli : intracellular localization of MukB protein

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