Rchr
J-GLOBAL ID：201101057215056943   Update date: Apr. 03, 2024

Matsuda Hideo

マツダ ヒデオ | Matsuda Hideo
Affiliation and department：
Osaka University Graduate School of Information Science and Technology, Department of Bioinformatic Engineering

About Osaka University Graduate School of Information Science and Technology, Department of Bioinformatic Engineering


Homepage URL  (1)： http://www.ist.osaka-u.ac.jp/japanese/introduction/professors/bioinformatic-engineering/genome-information-engineering/hideo-matsuda.html
Research field  (1)： Biological, health, and medical informatics
Research keywords  (3)： バイオインフォマティクス ,  ゲノム情報解析 ,  遺伝子ネットワーク
Research theme for competitive and other funds  (38)：
  • 2021 - 2024 Development of cell lineage inference method from cell atlas based on information criteria
  • 2020 - 2022 Development of integrated analysis method of single-cell transcriptome data for elucidating inflammatory process
  • 2018 - 2022 Development of cell diversity analysis method based on gene regulatory prediction by Bayesian network
  • 2019 - 2021 Development of multiple classification and comparison methods of cells based on information criteria and their applications to Cell Atlas
  • 2015 - 2021 動く1細胞の「意思」を読み取るin vivo網羅的動態・発現解析法の開発
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Papers (191)：
  • Tomonori Tanei, Shigeto Seno, Yoshiaki Sota, Takaaki Hatano, Yuri Kitahara, Kaori Abe, nanae masunaga, Masami Tsukabe, Tetsuhiro Yoshinami, Tomohiro Miyake, et al. High HER2 Intratumoral Heterogeneity Is a Predictive Factor for Poor Prognosis in Early-Stage and Locally Advanced HER2-Positive Breast Cancer. Cancers. 2024
  • Keigo Masuda, Yoshiaki Sota, Hideo Matsuda. Accurate Detection of Fusion Genes in Long-Read Transcriptome Datasets from Multiple Cancer Cell Lines. Proceedings of the 2024 14th International Conference on Bioscience, Biochemistry and Bioinformatics. 2024. 7-13
  • Keigo Masuda, Yoshiaki Sota, Hideo Matsuda. Detecting Fusion Genes in Long-Read Transcriptome Sequencing Data with FUGAREC. IPSJ Transactions on Bioinformatics. 2024. 17. 1-9
  • Kazufumi Hosoda, Shigeto Seno, Naomi Murakami, Hideo Matsuda, Yutaka Osada, Rikuto Kamiura, Michio Kondoh. Synthetic model ecosystem of 12 cryopreservable microbial species allowing for a noninvasive approach. Bio Systems. 2023. 235. 105087-105087
  • 長村徹, 瀬尾茂人, 藤本健二, 繁田浩功, 松田秀雄. 動画像シミュレータを介した強化学習による 細胞追跡手法. 情報処理学会論文誌 数理モデル化と応用. 2023. 16. 2. 11-22
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MISC (151)：
  • 川原崎 聡子, 瀬尾 茂人, 岡松 優子, 高橋 春弥, 野村 亘, 神戸 大朋, 木村 和弘, 斉藤 昌之, 松田 秀雄, 井上 和生, et al. UCP1レポーター脂肪細胞株を用いたβ-アドレナリンシグナル調節遺伝子の探索. 日本栄養・食糧学会大会講演要旨集. 2023. 77回. 267-267
  • 川原崎 聡子, 瀬尾 茂人, 岡松 優子, 高橋 春弥, 野村 亘, 神戸 大朋, 木村 和弘, 斉藤 昌之, 松田 秀雄, 井上 和生, et al. レポーター脂肪細胞株を用いたβ-アドレナリン刺激応答性UCP1発現誘導調節遺伝子の探索. 肥満研究. 2022. 28. Suppl. 318-318
  • Sohta Nishida, Junko Yoshida, Shigeto Seno, Kyoji Horie, Hideo Matsuda. A clustering method based on cell type identification for single-cell RNA-seq data. The Annual International Conference on Intelligent Systems for Molecular Biology (ISMB2022). 2022
  • 川原崎 聡子, 瀬尾 茂人, 鄭 惠芬, 高橋 春弥, 野村 亘, 神戸 大朋, 松田 秀雄, 井上 和生, 河田 照雄, 後藤 剛. レポーター前駆脂肪細胞株を用いた新規UCP1発現調節遺伝子の探索. 肥満研究. 2022. 27. Suppl. 338-338
  • Toshiya Tanaka, Shigeto Seno, Hideo Matsuda. Feature selection with VAE for scRNA-seq analysis. The Annual International Conference on Intelligent Systems for Molecular Biology / the European Conference on Computational Biology ISMB/ECCB 2021. 2021
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Patents (2)：
  • 評価方法、評価装置およびプログラム
  • マルチプレックス大腸がんマーカーパネル
Books (3)：
  • Transcription Factor Regulatory Networks: Methods and Protocols
    Humana Press, Springer Science+Business Media 2014 ISBN:9781493908042
  • バイオインフォマティクス事典
    共立出版 2006
  • Genome Informatics Vol.12
    Universal Academy Press 2001
Lectures and oral presentations  (3)：
  • Large-Scale Gene Regulatory Network Analysis for Adipocyte Differentiation on High-Performance Computer
    (The 23rd International Conference on Genome Informatics (GIW2012) 2012)
  • Reconstruction of Gene Regulatory Networks for Drug Target Discovery
    (The 3rd National Seminar and Workshop on Computer Aided-Drug Design: Virtual Screening (CADD2010) 2010)
  • Inference of Gene Regulatory Network for Cell Differentiations
    (The Korean Society for Bioinformatics and Systems Biology (KSBSB) Summer School 2010 2010)
Education (3)：
  • 1984 - 1987 Kobe University Graduate School of Science and Technology Department of System Scicen
  • 1982 - 1984 Kobe University Graduate School of Engineering Department of Systems Engineering
  • 1978 - 1982 Kobe University Faculty of Science Department of Physics
Professional career (1)：
  • 学術博士 (神戸大学)
Work history (6)：
  • 2002/04 - 現在 Osaka University Graduate School of Information Science and Technology Department of Bioinformatic Engineering Professor
  • 2022/04 - 2023/03 Kyoto University Institute for Chemical Research Bioinformatics Center Visiting Professor
  • 1994/10 - 2002/03 Osaka University School of Engineering Science Department of Information and Computer Sciences Associate Professor
  • 1994/04 - 1994/09 Kobe University Faculty of Engineering Department of Computer Science and Systems Engineering Associate Professor
  • 1990/02 - 1994/03 Kobe University Faculty of Engineering Department of Systems Engineering Lecturer
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Committee career (5)：
  • 2023/04 - 現在 Japanese Society of Bioinformatics Board Member
  • 2017/10 - 現在 科学技術振興機構バイオサイエンスデータベースセンター基盤技術分科会 主査
  • 2013/05 - 現在 東洋紡バイオテクノロジー研究財団 評議員
  • 2011/10 - 現在 科学技術振興機構バイオサイエンスデータベースセンター 運営委員
  • 2019/04 - 2022/03 Japanese Society for Bioinformatics Board Member
Awards (6)：
  • 2021/03 - Japan Society for Bioscience, Biotechnology, and Agrochemistry The Excellent Paper Award Published in Bioscience, Biotechnology, & Biochemistry Long non-coding RNA 2310069B03Rik functions as a suppressor of Ucp1 expression under prolonged cold exposure in murine beige adipocytes
  • 2014/09 - 情報処理学会 シニア会員
  • 2014/06 - Information Processing Society of Japan Outstanding Paper Award A method for isoform prediction from RNA-Seq data by iterative mapping
  • 2012/01 - Asia-Pacific Bioinformatics Conference 2012 Best Paper Award
  • 2004/09 - 情報科学技術フォーラム 論文賞 遺伝子の機能分類を利用した遺伝子制御ネットワーク推定手法
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Association Membership(s) (1)：
日本バイオインフォマティクス学会
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