Nakagome Shigeki

ナカゴメシゲキ | Nakagome Shigeki

Affiliation and department：
Job title： Visiting Researcher
Other affiliations (1)：

Homepage URL (1)： https://shigekinakagomelab.com

Research field (1)： Applied anthropology

Research keywords (5)： Human genome diversity , Crohn's disease , Evolutionary medicine , Complex diseases , Human evolution

Research theme for competitive and other funds (6)：

2022 - 2027 Elucidating the dynamics of the Copan dynasty in the Maya civilization through paleogenomics
2022 - 2025 Population genomics of Jomon: elucidating adaptive evolution in ancient hunters and gatherers and its legacy in modern populations
2020 - 2025 パレオゲノミクス解析プラットフォーム開発とその応用
2021 - 2024 シン・パレオゲノミクスが創る博物館資料群活用の新展開
2020 - 2022 Identifying shifts in selective pressures driven by environmental and cultural changes: Population genomics modelling on ancient and modern Maya

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Papers (33)：

Juhyeon Lee, Takehiro Sato, Atsushi Tajima, Tsend Amgalantugs, Batmunkh Tsogtbaatar, Shigeki Nakagome, Toshihiko Miyake, Noriyuki Shiraishi, Choongwon Jeong, Takashi Gakuhari. Medieval genomes from eastern Mongolia share a stable genetic profile over a millennium. Human Population Genetics and Genomics. 2024. 4. 1. 0004
Takashi Gakuhari, Shigeki Nakagome, Simon Rasmussen, Morten E. Allentoft, Takehiro Sato, Thorfinn Korneliussen, Blánaid Ní Chuinneagáin, Hiromi Matsumae, Kae Koganebuchi, Ryan Schmidt, et al. Ancient Jomon genome sequence analysis sheds light on migration patterns of early East Asian populations. Communications Biology. 2020. 3. 1
Shigeki Nakagome. Genomic profiling of intestinal T-cell receptor repertoires in inflammatory bowel disease. Genes & Immunity. 2020
Shigeki Nakagome. The evolving Japanese: the dual structure hypothesis at 30. Evolutionary Human Sciences. 2020
Gakuhari T, Nakagome S, Rasumussen S, Allentoft M, Sato T, Korneliussen T, Chuinneagain BN, Matsumae H, Koganebuchi K, Schmidt R, et al. Jomon genome sheds light on East Asian population history. BioRxiv. 2019

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MISC (5)：

Books (5)：

The origin of modern Japanese based on genome-wide SNP data
JBA Biosciences and Industry 2015
Human disease and evolution
Keiso-shobo 2013
炎症性腸疾患のリスク変異の進化
NTS「生物の科学遺伝 2013年5月号」 2013
総説『アボリジニーの全ゲノム配列から探る現生人類の「出アフリカ」拡散』
NTS「生物の科学遺伝 2012年7月号」 2012
Evolutionary insights into the “population-specificity” of genetic factors associated with inflammatory bowel diseases.
Book Chapter in Ulcerative Colitis from Genetics to Complications Mustafa M. Shennak (Editor) Rijeka: InTech

Lectures and oral presentations (11)：

Application of kernel approximate Bayesian computation for population genetic study
(Mathematical Ecology & Evolution seminar in Meiji University Ikuta campus 2012)
琉球諸島と北部九州におけるクローン病の遺伝と環境の相互作用に関する人類学的考察
(第66回日本人類学会大会 2012)
Populstion-specific susceptibility of Crohn's disease risk alleles in the NOD2 locus
(The 57th Annual Meeting of The Japan Society of Human Genetics, Tokyo, Japan 2012)
Kernel Bayesian Computation
(XXVIth International Biometric Conference, Kobe, Japan 2012)
Kernel Approximate Bayesian Computation
(Annual Meeting of the Society for Molecular Biology and Evolution, Dublin, Ireland 2012)

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Professional career (1)：

Work history (4)：

2018/04 - 現在 Kanazawa University Center for Cultural Resource Studies Visiting Researcher
2016/09 - 現在 Trinity College Dublin School of Medicine Ussher Assistant Professor in Genomic Medicine
2014/09 - 2016/08 University of Chicago Department of Human Genetics JSPS Overseas Research Fellow
2013/04 - 2014/08 University of Chicago Department of Human Genetics JSPS Research Fellow (PD)

Awards (3)：

2011/07 - Society for Molecular Biology and Evolution Postdoctoral Travel Award SMBE2011
2009/03 - Graduate School of Frontier Sciences, The University of Tokyo Dean's Award in International Exchange Section
2005/03 - College of Bioresource Sciences, Nihon University Dean's Prize

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