Research theme for competitive and other funds (27)：
2021 - 2026 Theoretical study of efficient excitation energy transfer in light-harvesting antenna of higher plants
2016 - 2021 構造揺らぎ・構造変化に基づく生体分子の機能発現の理論的解明
2018 - 2020 水の局所構造と水素結合ダイナミクス:過冷却水と二成分液体
2014 - 2018 Theoretical investigation of excitation energy transfer in biomolecular systems with molecular simulation
2014 - 2017 Broadband spectral measurements on liquid water with oxygen-isotopes from megahertz to mid-infrared region
2013 - 2017 生体分子の構造遍歴ダイナミクスと機能発現の分子機構の理論的解明
2012 - 2015 Development of mid-infrared spectroscopy with ultrabroaband coherent light source
2010 - 2013 線形・非線形分光シミュレーションによる緩和および反応ダイナミクスの解明
2011 - 2012 生体分子の構造変化に伴う状態遷移ダイナミックスの解析手法の開発とその応用
2010 - 2012 水および水溶液の構造とダイナミクス:理論と実験
2010 - 2012 Development of Real-Time Formula of Molecular Theory and Its Applications to Nonequilibrium Processes
2009 - 2012 Dynamical Barrier and Quantum localization: Theory of Hamiltonian Dynamics with mixed phase space
2006 - 2010 空間・時間不均一ダイナミクス理論の構築
2007 - 2008 Water Dynamics ; Fluctuations, Phase Transitions and Reactions
2006 - 2008 Classical and quantum chaos in the system with mixed phase space
2004 - 2007 化学反応および相転移ダイナミクスの多次元振動分光法による理論解析
2003 - 2005 Dynamical origin of hierachial time scale in many degrees of freedom systems Hamitonian systems with internal degreees of freedom
2002 - 2005 結晶化のメソタイムスケールダイナミクス
2002 - 2005 Water Dynamics; Fluctuation and Chemical Reactions
2001 - 2003 凝縮系の揺らぎおよび非線形分光に関する理論研究
1998 - 2000 Theoretical Studies of Fluctuations and Reaction Dynamics in Many-Body Chemical Systems
1997 - 1999 溶液の高次非線形分光と化学反応ダイナミクスの理論研究
1998 - 1999 Fluctuation and Functions of Liquid Water
1996 - 1998 Proton Transfer Dynamics in Water and Effect of Water Fluctuation on Chemical Reactions
1996 - 1996 溶液内光励起分子反応のダイナミックスの理論
1995 - 1995 光励起分子の緩和過程への溶媒効果に関する理論研究
1994 - 1994 光励起分子の緩和過程に対する溶媒効果の理論的研究
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Papers (60)：
Shin-ichi Koda, Shinji Saito. A Flat-bottom Elastic Network Model for Generating Improved Plausible Reaction Paths. 2024
Yoshihiko Furuike, Yasuhiro Onoue, Shinji Saito, Toshifumi Mori, Shuji Akiyama. The priming phosphorylation of KaiC is activated by the release of its autokinase autoinhibition. 2024
Junichi Ono, Yoshihiro Matsumura, Toshifumi Mori, Shinji Saito. Conformational Dynamics in Proteins: Entangled Slow Fluctuations and Nonequilibrium Reaction Events. The Journal of Physical Chemistry B. 2023
Toshifumi Mori, Shinji Saito. Molecular Insights into the Intrinsic Dynamics and Their Roles During Catalysis in Pin1 Peptidyl-prolyl Isomerase. The Journal of Physical Chemistry B. 2022
Yoshihiko Furuike, Atsushi Mukaiyama, Shin-ichi Koda, Damien Simon, Dongyan Ouyang, Kumiko Ito-Miwa, Shinji Saito, Eiki Yamashita, Taeko Nishiwaki-Ohkawa, Kazuki Terauchi, et al. Regulation mechanisms of the dual ATPase in KaiC. Proceedings of the National Academy of Sciences. 2022. 119. 19
中村浩章, 中村浩章, 宮西寿典, 藤原進, 水口朋子, 安永卓生, 中田彩子, 宮崎剛, 大塚教雄, 剣持貴弘, et al. Structural disruption of telomeric DNA by tritium beta decay. 日本物理学会講演概要集(CD-ROM). 2020. 75. 1. 2791-2791
Toshifumi Mori, Shinji Saito. Static and Dynamic Roles of Proteins in Proline Isomerization Reactions. BIOPHYSICAL JOURNAL. 2017. 112. 3. 498A-498A
Toshifumi Mori, Shinji Saito. Dynamic Heterogeneity and the Role of Non-Native Contacts in the Protein Folding/Unfolding Transitions. BIOPHYSICAL JOURNAL. 2016. 110. 3. 361A-361A
Toshifumi Mori, Shinji Saito. Theoretical Study of the Protein Folding Dynamics from a Time Correlation Function Approach. BIOPHYSICAL JOURNAL. 2015. 108. 2. 211A-211A
Excitation energy transfer in the Fenna-Matthews-Olson protein optimized by site-dependent fluctuations", Symposium on Frontiers in quantum and classical molecular dynamics for complex systems, Pacifichem 2020, Honolulu, USA, Dec. 18 (2021).
(Pacifichem 2021 2021)
Excitation energy transfer in the Fenna-Matthews-Olson protein optimized by site-dependent fluctuations
(Pacifichem 2021 2021)
Role of fluctuation in biomolecular function: Molecular origin of efficient excitation energy transfer in the Fenna-Matthews-Olson protein
(8th French-Japanese Workshop on Computational Methods in Chemistry 2020)
