Nishimura Yoshiki

Affiliation and department：
Job title： Assistant professor
Homepage URL (1)： https://sites.google.com/view/shikanailab/research/nishimura-group

Research field (1)： Plants: molecular biology and physiology

Research keywords (1)： cpDNA, mtDNA, nucleoid, maternal, inheritance, mRNA stability, optical tweezers

Research theme for competitive and other funds (13)：

2021 - 2024 Elucidation of the regulatory mechanism of chloroplast nucleoid with DNA supercoils as the core
2021 - 2023 Exploring the molecular mechanism of cell cycle-mediated solid–liquid phase transition of chloroplast nucleoids
2019 - 2021 Harnessing the uniparental inheritance of chloroplasts
2018 - 2021 Hacking the sexual program of green algae by functional polyamides
2018 - 2021 Exploring the dynamism of chloroplastic chromosomes, nucleoids

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Papers (54)：

Sa Geng, Takashi Hamaji, Patrick J Ferris, Minglu Gao, Yoshiki Nishimura, James Umen. A conserved RWP-RK transcription factor VSR1 controls gametic differentiation in volvocine algae. Proc Natl Acad Sci USA. 2023. 120. 29. e2305099120
Kayoko Yamamoto, Takashi Hamaji, Hiroko Kawai-Toyooka, Ryo Matsuzaki, Fumio Takahashi, Yoshiki Nishimura, Masanobu Kawachi, Hideki Noguchi, Yohei Minakuchi, James G Umen, et al. Three genomes in the algal genus Volvox reveal the fate of a haploid sex-determining region after a transition to homothallism. Proceedings of the National Academy of Sciences of the United States of America. 2021. 118. 21
Mari Takusagawa, Yusuke Kobayashi, Yoichiro Fukao, Kumi Hidaka, Masayuki Endo, Hiroshi Sugiyama, Takashi Hamaji, Yoshinobu Kato, Isamu Miyakawa, Osami Misumi, et al. HBD1 protein with a tandem repeat of two HMG-box domains is a DNA clip to organize chloroplast nucleoids in Chlamydomonas reinhardtii. Proceedings of the National Academy of Sciences. 2021. 118. 20. e2021053118-e2021053118
Haruka Higashi, Yoshinobu Kato, Tomoya Fujita, Shintaro Iwasaki, Masayuki Nakamura, Yoshiki Nishimura, Mizuki Takenaka, Toshiharu Shikanai. The Pentatricopeptide Repeat Protein PGR3 Is Required for the Translation of petL and ndhG by Binding Their 5′ UTRs. Plant and Cell Physiology. 2021
Yusuke Kobayashi, Masaki Odahara, Yasuhiko Sekine, Takashi Hamaji, Sumire Fujiwara, Yoshiki Nishimura, Shin-Ya Miyagishima. Holliday Junction Resolvase MOC1 Maintains Plastid and Mitochondrial Genome Integrity in Algae and Bryophytes. Plant physiology. 2020. 184. 4. 1870-1883

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MISC (26)：

Motoki Kayama, Jun-Feng Chen, Takashi Nakada, Yoshiki Nishimura, Toshiharu Shikanai, Hideaki Miyashita, Yuichiro Kashiyama, Ryoma Kamikawa. Plastoquinone-mediated electron transport in a non-photosynthetic plastid of the heterotrophic green alga Hyalogonium sp. VIII ECOP-ISOP 2019. 2019
梶川昌孝, 山内万里花, 新川はるか, 田中学, 幡野恭子, 西村芳樹, 加藤美砂子, 福澤秀哉. オートファジーに依存した緑藻Chlamydomonas reinhardtiiの生存と油脂蓄積. 藻類. 2019. 67. 1. 70
東遥香, 加藤義宣, 藤田智也, 藤田智也, 水戸麻理, 岩崎信太郎, 岩崎信太郎, 西村芳樹, 竹中瑞樹, 鹿内利治. ペンタトリコペプチドリピートタンパク質PGR3は葉緑体コードNDHサブユニットであるndhGの翻訳を制御する. 日本植物生理学会年会(Web). 2019. 60th
浜地貴志, 小林優介, 山岡尚平, 鹿内利治, 西村芳樹. 緑色植物における葉緑体DNAリガーゼのバクテリア型から真核生物型への機能移譲. 日本植物学会大会研究発表記録. 2019. 83rd
浜地貴志, 山岡尚平, 鹿内利治, 西村芳樹. 母性遺伝メカニズムの解明に向けたクラミドモナス有性生殖のゲノム編集アプローチ. 日本植物学会大会研究発表記録. 2018. 82nd. 256

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Lectures and oral presentations (6)：

Sequencing the mating type locus of the isogamous colonial Gonium pectorale
(15th International Conference on the Cell & Molecular Biology of Chlamydomonas 2013)
RecAホモログによる葉緑体ゲノム安定性の維持
(第54回日本植物生理学会年会 2013)
緑藻クラミドモナスの生殖とオルガネラ遺伝をつなぐ遺伝子を探る
(第54回日本植物生理学会年会 2013)
母性遺伝を操る生殖プログラムの構造
(日本植物学会第76回大会 2012)
単細胞緑藻クラミドモナスにおいて細胞質遺伝はGsp1によって制御される
(日本植物形態学会第24回大会 2012)

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Work history (4)：

2008/09/01 - 2008.9- Kyoto University, Dep. of Botany, Assistant Professor -
2006/07/01 - 2006.7-2008.8 University of Tokyo, IMCB, Assistant Professor -
2003/04/01 - 2003.4-2006.6 Cornell University (USA), postdoctoral fellow -
2001/04/01 - 2001.4-2003.3 University of Tokyo, postdoctoral fellow -

Association Membership(s) (3)：

The Japanese Society of Plant Morphology , The Japanese Society of Plant Physiologists , The Botanical Society of Japan

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