Takada Shoji

タカダショウジ | Takada Shoji

Affiliation and department：
Job title： Professor
Homepage URL (1)： http://theory.biophys.kyoto-u.ac.jp

Research field (1)： Biophysics

Research theme for competitive and other funds (21)：

2020 - 2025 Multiscale Theories of Genome Modality
2021 - 2024 Development of next-generation coarse-grained simulations towards analysis of cellular-scale assembly
2016 - 2019 Theoretical study on transition path search algorithms in complex biomolecular systems
2016 - 2018 ヌクレオソーム動構造とそのエピジェネティック制御の分子シミュレーション研究
2015 - 2017 クロマチン構造と共役した転写因子動態の分子シミュレーション研究

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Papers (225)：

Suguru Kato, Shoji Takada, Sotaro Fuchigami. Particle Smoother to Assimilate Asynchronous Movie Data of High-Speed AFM with MD Simulations. Journal of Chemical Theory and Computation. 2023
Azuki Mizutani, Cheng Tan, Yuji Sugita, Shoji Takada. Micelle-like clusters in phase-separated Nanog condensates: A molecular simulation study. PLOS Computational Biology. 2023. 19. 7. e1011321-e1011321
Fritz Nagae, Shoji Takada, Tsuyoshi Terakawa. Histone chaperone Nap1 dismantles an H2A/H2B dimer from a partially unwrapped nucleosome. Nucleic Acids Research. 2023. 51. 11. 5351-5363
Yasuhiro Matsunaga, Sotaro Fuchigami, Tomonori Ogane, Shoji Takada. End-to-end differentiable blind tip reconstruction for noisy atomic force microscopy images. Scientific reports. 2023. 13. 1. 129-129
Takumi Washio, Xiaoke Cui, Ryo Kanada, Jun-ichi Okada, Seiryo Sugiura, Yasushi Okuno, Shoji Takada, Toshiaki Hisada. Using incomplete Cholesky factorization to increase the time step in molecular dynamics simulations. Journal of Computational and Applied Mathematics. 2022

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MISC (35)：

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Books (1)：

Education (4)：

Professional career (1)：

Work history (6)：

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