Akagi Takashi

アカギタカシ | Akagi Takashi

Affiliation and department：
Job title： Professor

Research field (3)： Evolutionary biology , Plants: molecular biology and physiology , Horticulture

Research theme for competitive and other funds (25)：

2024 - 2029 Transcriptome/Cistrome analysis of ethylene synthesis mutants to elucidate the regulation of fruit ripening
2022 - 2027 Genomic dynamics underlying the plastic hermaphroditism in plants: the basis of exploratory reproductive adaptations.
2022 - 2027 Genomic dynamics underlying the plastic hermaphroditism in plants: the basis of exploratory reproductive adaptations
2022 - 2027 Genomic dynamics driving plastic sexuality in plants
2022 - 2026 カキのゲノム進化に基づく果実の形状多様性獲得モデルの構築

2022 - 2026 Simultaneous expression system of herbicide-metabolizing genes key to the expression of multiple-herbicide resistance in E. phyllopogon

2019 - 2025 作物科学研究へのパラダイムシフトを誘起するカキ属植物の研究加速化のための基盤形成

2020 - 2024 New Frontier of Fruit Postharvest Physiology-Low Temperature modulated Ripening and its application

2020 - 2024 ゲノム・遺伝子倍化が駆動する植物分子の新機能の探索とデザイン

2020 - 2023 開花・性・花寿命を変える菌因子の特定

2019 - 2022 Elucidation of coordinated regulation mechanism of cytochrome P450 genes: key genes for multiple-herbicide resistance in Echinochloa phyllopogon

2018 - 2022 Genome-wide model to regulate the wide diversity of fruit shape in persimmon

2019 - 2022 Comparative genomics for the sex chromosomes evolutions in woody crops

2019 - 2021 Evolutionary paths to establish flexibility in plant sexuality

2016 - 2021 Species barriers in endosperm: key molecular mechanisms of epigenetic regulation

2017 - 2019 Characterization of interspecific cross incompatibility in the genus Prunus

2015 - 2019 Studies on the molecular basis and evolution of Prunus-specific self-incompatibility recognition system

2015 - 2019 カキ属をモデルとした環境応答性の性表現多様化機構の解明

2016 - 2018 Comprehensive analysis of full length cDNA and alternative splicing for the genes related to fruit development and ripening

2014 - 2018 Genome-wide modeling of fruit development and maturation in persimmons

2015 - 2017 Diversification of agriculturally important traits accelerated by polyploidization in Diospyros

2013 - 2017 Molecular Analysis for heterostyly by using genomics and transcriptmics approches

2011 - 2015 Studies on MADS-box transcription factors associated with bud dormancy regulation in the fruit tree species of Prunus

2011 - 2011 Analysis on Genomic Evolution via Domestication Steps of Amygdalus subgenus

2009 - 2010 カキの甘渋性に関する研究

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Papers (73)：

Takashi Akagi, Naoko Fujita, Kanae Masuda, Kenta Shirasawa, Kiyotaka Nagaki, Ayano Horiuchi, Eriko Kuwada, Riko Kunou, Koki Nakamura, Yoko Ikeda, et al. Rapid and dynamic evolution of a giant Y chromosome inSilene latifolia. 2023
Ayano Horiuchi, Kanae Masuda, Kenta Shirasawa, Noriyuki Onoue, Naoko Fujita, Koichiro Ushijima, Takashi Akagi. Ongoing Rapid Evolution of a Post-Y Region Revealed by Chromosome-Scale Genome Assembly of a Hexaploid Monoecious Persimmon (Diospyros kaki). Molecular biology and evolution. 2023. 40. 7
Kanae Masuda, Rika Uchida, Naoko Fujita, Yoshiaki Miyamoto, Takahiro Yasue, Yasutaka Kubo, Koichiro Ushijima, Seiichi Uchida, Takashi Akagi. Application of deep learning diagnosis for multiple traits sorting in peach fruit. Postharvest Biology and Technology. 2023. 201. 112348-112348
Kim Nhung Ta, Sae Shimizu-Sato, Ayumi Agata, Yuri Yoshida, Ken-Ichiro Taoka, Hiroyuki Tsuji, Takashi Akagi, Yasuhiro Tanizawa, Ryosuke Sano, Misuzu Nosaka-Takahashi, et al. A leaf-emanated signal orchestrates grain size and number in response to maternal resources. The Plant journal : for cell and molecular biology. 2023. 115. 1. 175-189
Ayano Horiuchi, Kanae Masuda, Kenta Shirasawa, Noriyuki Onoue, Ryusuke Matsuzaki, Ryutaro Tao, Yasutaka Kubo, Koichiro Ushijima, Takashi Akagi. Genetic basis of lineage-specific evolution of fruit traits in hexaploid persimmon. DNA research : an international journal for rapid publication of reports on genes and genomes. 2023

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MISC (73)：

Sato Yutaka, Kusaba Makoto, Naito Ken, Isobe Sachiko, Ariizumi Tohru, Sato Shusei, Sato Kazuhiro, Niikura Satoshi, Akagi Takashi. The future of genetic resources and breeding science brightened by genomics and new technologies. Breeding Research. 2023. 25. 1. 33-40
堀内綾乃, 増田佳苗, 白澤健太, 尾上典之, 藤田尚子, 牛島幸一郎, 赤木剛士. Chromosome-scale genome assembly of a persimmon cv. Taishu revealed rapid evolution of a post-Y chromosome. 園芸学研究別冊. 2023. 22. 1
赤木剛士, 赤木剛士, VARKONYI-GASIC Erika, 白澤健太, CATANACH Andrew, HENRY Isabelle M., MERTTEN Daniel, DATSON Paul, 増田佳苗, 藤田尚子, et al. Recurrent neo-sex chromosome evolution in the genus Actinidia (II). 園芸学研究別冊. 2023. 22. 1
藤田尚子, 白澤健太, 牛島幸一郎, 赤木剛士. Silene属の全ゲノム比較進化解析から紐解く性染色体と性決定因子群の成立. 日本植物学会大会研究発表記録(CD-ROM). 2022. 86th
内田里佳, 藤田尚子, 増田佳苗, 安江隆浩, 宮本善秋, 内田誠一, 赤木剛士, 赤木剛士. Deep learning predicts complex fruit internal traits for peach sorting. 園芸学研究別冊. 2022. 21. 1

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Books (1)：

遺伝子から解き明かす性の不思議な世界 : 科学が明らかにした多様性と進化の仕組み
一色出版,悠書館 (発売) 2019 ISBN:9784910389066

Lectures and oral presentations (60)：

Boy meets Girl, everywhere? Mysteries in neo-sex chromosome evolution in kiwifruit
(XI International Symposium on Kiwifruit 2024)
植物における性の収斂進化に潜む「生理的な共通性」を求めて
(植物化学調節学会第58回大会 2023)
ゲノム・遺伝情報への深層学習 ~X-AI協働研究
(令和5年度野菜花き課題別研究会 2023)
古今ゲノム倍化が駆動する『植物の性の可塑性』~柿の進化に学ぶ
(倍数体をどうにかする会 2023 2023)
ゲノム x 進化 x AIの視点から見える「植物らしさ」
(第4回木村資生記念進化学セミナー 2023)

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Professional career (1)：

PhD in Agricultural Science (Kyoto University)

Awards (3)：

2023/03 - 園芸学会園芸学会奨励賞
2019/11 - 日本農学会農学進歩賞
2019/04 - 文部科学省文部科学大臣表彰若手科学者省

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