Rchr
J-GLOBAL ID：201401096521596568   Update date: Apr. 02, 2024

Akutsu Tatsuya

アクツ タツヤ | Akutsu Tatsuya
Affiliation and department：
Kyoto University Institute for Chemical Research

About Kyoto University Institute for Chemical Research


Homepage URL  (1)： http://www.bic.kyoto-u.ac.jp/takutsu/members/takutsu/japanese.html
Research field  (3)： Intelligent informatics ,  Information theory ,  Biological, health, and medical informatics
Research theme for competitive and other funds  (23)：
  • 2022 - 2027 Advanced Studies and Developments on Discrete Preimage Problems
  • 2018 - 2023 Analysis and Applications of Discrete Preimage Problems
  • 2017 - 2020 Pan-cancer module and network analysis for identifying dominating subnetworks across hu man cancers
  • 2014 - 2019 An Approach to Novel Structure Design by Combining Discrete Methods and Statistical Methods
  • 2014 - 2018 Structurally Robust Control of Complex Networks
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Papers (160)：
  • Wataru Someya, Tatsuya Akutsu, Jean-Marc Schwartz, Jose C Nacher. Measuring criticality in control of complex biological networks. NPJ systems biology and applications. 2024. 10. 1. 9-9
  • Kouki Matsuda, Arata Shirakami, Ryota Nakajima, Tatsuya Akutsu, Masanori Shimono. Whole-Brain Evaluation of Cortical Microconnectomes. eNeuro. 2023. 10. 10
  • Jing Xu, Fuyi Li, Chen Li, Xudong Guo, Cornelia Landersdorfer, Hsin-Hui Shen, Anton Y Peleg, Jian Li, Seiya Imoto, Jianhua Yao, et al. iAMPCN: a deep-learning approach for identifying antimicrobial peptides and their functional activities. Briefings in bioinformatics. 2023. 24. 4
  • Koji Shiota, Akira Suma, Hiroyuki Ogawa, Takuya Yamaguchi, Akio Iida, Takahiro Hata, Mutsuyoshi Matsushita, Tatsuya Akutsu, Masaru Tateno. AQDnet: Deep Neural Network for Protein-Ligand Docking Simulation. ACS omega. 2023. 8. 26. 23925-23935
  • Tomoya Mori, Toshiro Takase, Kuan-Chun Lan, Junko Yamane, Cantas Alev, Azuma Kimura, Kenji Osafune, Jun K. Yamashita, Tatsuya Akutsu, Hiroaki Kitano, et al. eSPRESSO: topological clustering of single-cell transcriptomics data to reveal informative genes for spatio-temporal architectures of cells. BMC Bioinformatics. 2023. 24. 1
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MISC (110)：
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Books (7)：
  • 複雑ネットワークと制御理論
    森北出版 2023 ISBN:9784627818811
  • バイオインフォマティクス : Pythonによる実践レシピ
    朝倉書店 2020 ISBN:9784254122541
  • Algorithms for Analysis, Inference, and Control of Boolean Networks
    World Scientific 2018
  • Sequence alignment algorithms: Applications to glycans and trees and tree-like structures
    Handbook of Chemoinformatics Algorithms , , 363-381 2010
  • バイオインフォマティクス ー配列データ解析と構造予測ー
    朝倉書店 2007
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Lectures and oral presentations  (29)：
  • ランダムフォレストとMILPを用いた化合物推定法
    (2023年日本オペレーションズ・リサーチ学会秋季研究発表会 2023)
  • Graph Theoretic Approaches to Analysis of Biological Networks
    (2023 13th International Conference on Biomedical Engineering and Technology (ICBET 2023) 2023)
  • On the Complexity of Tree Edit Distance with Variables
    (33rd International Symposium on Algorithms and Computation (ISAAC 2022) 2022)
  • 生体ネットワークの推定と制御のための数理とアルゴリズム
    (第11回生命医薬情報学連合退会 2022)
  • Network-based Approaches to Identification of Important Genes and Proteins
    (2022 10th International Conference on Bioinformatics and Computational Biology (ICBCB 2022) 2022)
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Education (3)：
  • 1986 - 1989 The University of Tokyo The Graduate School of Engineering
  • 1984 - 1986 The University of Tokyo
  • 1980 - 1984 The University of Tokyo The Faculty of Engineering
Professional career (1)：
  • 工学博士 (東京大学)
Work history (4)：
  • 2001/10 - 現在 Kyoto University Institute for Chemical Research Bioinformatics Center
  • 1996/04 - 2001/09 The University of Tokyo The Institute of Medical Science Human Genome Center
  • 1994/04 - 1996/03 Gunma University
  • 1989/04 - 1994/03 通商産業省工業技術院機械技術研究所 研究員
Awards (1)：
  • 2022/09 - Japanese Society for Bioinformatics Japanese Society for Bioinformatics Prize Mathematical and Pioneering Studies on Inference and Control of Biological Networks
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