Rsrc
J-GLOBAL ID:201410002113473741   Research Resource code:NBDC01236 Update date:Dec. 01, 2014

ASPicDB: Alternative Splicing Prediction Data Base

ASPicDB: Alternative Splicing Prediction Data Base
Owning Organization:
  • Consorzio Interuniversitario per le Applicazioni di Supercalcolo per Universita e Ricerca
Resource classification: Database
Tag (subject)  (4): Genome/Gene ,  cDNA/EST ,  Protein ,  Health/Disease
Tag (data type)  (2): Sequence ,  Expression
Species (6): Homo sapiens (NCBI Taxonomy ID: 9606) ,  Mus musculus (NCBI Taxonomy ID: 10090) ,  Rattus norvegicus (NCBI Taxonomy ID: 10116) ,  Gallus gallus (NCBI Taxonomy ID: 9031) ,  Bos taurus (NCBI Taxonomy ID: 9913) ,  Canis lupus (NCBI Taxonomy ID: 9612)
Overview:
ASPicDB is a database which provided access to reliable annotations of the alternative splicing pattern of human genes, obtained by ASPic algorithm (Castrignano' et al. 2006), and to the functional annotation of predicted isoforms. It allows users to select and extract specific sets of data related to genes, transcripts and introns fulfilling a combination of user-defined criteria. Several tabular and graphical views of the results are presented, providing a comprehensive assessment of the functional implication of alternative splicing in the gene set under investigation. Furthermore, ASPicDB includes information on tissue-specific splicing patterns of normal and cancer cells, based on available EST data and their library source annotation.
Source: NBDC
Record maintainer: Integbio Database Catalog
Record license: Creative Commons CC0 license

Return to Previous Page