J-GLOBAL ID:201410019333494731   Research Resource code:NBDC00169 Update date:Jan. 12, 2021

Plant snoRNA Database

Plant snoRNA Database
Owning Organization:
  • James Hutton Institute
Resource classification: Database
Tag (subject)  (1): RNA
Tag (data type)  (2): Sequence ,  Expression
Species (17): Arabidopsis thaliana (NCBI Taxonomy ID: 3702) ,  Chlamydomonas reinhardtii (NCBI Taxonomy ID: 3055) ,  Medicago truncatula (NCBI Taxonomy ID: 3880) ,  Solanum lycopersicum (NCBI Taxonomy ID: 4081) ,  Lycopersicon hirsutum f. glabratum (NCBI Taxonomy ID: 283673) ,  Solanum tuberosum (NCBI Taxonomy ID: 4113) ,  Beta vulgaris (NCBI Taxonomy ID: 161934) ,  Mesembryanthemum crystallinum (NCBI Taxonomy ID: 3544) ,  Citrus unshiu (NCBI Taxonomy ID: 55188) ,  Triticum aestivum (NCBI Taxonomy ID: 4565) ,  Zea mays (NCBI Taxonomy ID: 4577) ,  Hordeum vulgare (NCBI Taxonomy ID: 4513) ,  Sorghum bicolor (NCBI Taxonomy ID: 4558) ,  Oryza sativa (NCBI Taxonomy ID: 4530) ,  Pinus taeda (NCBI Taxonomy ID: 3352) ,  Physcomitrella patens (NCBI Taxonomy ID: 3218) ,  Ceratodon purpureus (NCBI Taxonomy ID: 3225)
Plant snoRNA Version 1.2 is a database that combines information of the Arabidopsis genome gathered during 3 separate computerbased searches for box C/D snoRNA genes with the results from ncRNA studies added.
This list of snoRNAs were applied to the genomes of a variety of non-Arabidopsis plant species and thus assisted in the identification of more or less 250 genes from these species.
The database includes the alignment sequences of these 250 genes.
The content of the database is presented in a series of tables.
The sequences can be downloaded in FASTA file format.
Source: NBDC
Record maintainer: Integbio Database Catalog
Record license: Creative Commons CC0 license

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