J-GLOBAL ID:201410023919547580   Research Resource code:NBDC00130 Update date:Sep. 28, 2023

MBGD: Microbial Genome Database for Comparative Analysis

MBGD: Microbial Genome Database for Comparative Analysis
Owning Organization:
Resource classification: Data,Database
Tag (subject)  (2): Genome/Gene ,  Organism
Tag (data type)  (2): Sequence ,  Taxonomy
Species (10): Archaea (NCBI Taxonomy ID: 2157) ,  Bacteria (NCBI Taxonomy ID: 2) ,  Apicomplexa (NCBI Taxonomy ID: 5794) ,  Mycetozoa (NCBI Taxonomy ID: 142796) ,  Fungi (NCBI Taxonomy ID: 4751) ,  Homo sapiens (NCBI Taxonomy ID: 9606) ,  Caenorhabditis elegans (NCBI Taxonomy ID: 6239) ,  Drosophila (NCBI Taxonomy ID: 7215) ,  Bacillariophyta (NCBI Taxonomy ID: 2836) ,  Arabidopsis thaliana (NCBI Taxonomy ID: 3702)
MBGD is a database with a workbench system for comparative analysis of completely sequenced microbial genomes, mainly for creating orthologous or homologous gene cluster tables. MBGD classifies genomes by the hierarchical clustering method known as UPGMA, using precomputed similarity relationships identified by all-against-all BLAST search. Users can change the set of organisms or cutoff parameters to create their own orthologous groupings. Thus comparative genomics is facilitated from various points of view such as ortholog identification, paralog clustering, motif analysis and gene order comparison.
Source: NBDC
Record maintainer: Integbio Database Catalog
Record license: Creative Commons CC0 license

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