J-GLOBAL ID:201410032607018202   Research Resource code:NBDC00219 Update date:May. 12, 2019

UCSC Genome Browser

UCSC Genome Browser
Owning Organization:
  • University of California, Santa Cruz
Resource classification: Database
Tag (subject)  (3): Genome/Gene ,  Genetic variation ,  Protein
Tag (data type)  (3): Sequence ,  Expression ,  Image/Movie
Species (6): Mammalia (NCBI Taxonomy ID: 40674) ,  Vertebrata (NCBI Taxonomy ID: 7742) ,  Deuterostomia (NCBI Taxonomy ID: 33511) ,  Hexapoda (NCBI Taxonomy ID: 6960) ,  Nematoda (NCBI Taxonomy ID: 6231) ,  Aplysiidae (NCBI Taxonomy ID: 6498)
UCSC Genome Browser is a database which contains the reference sequence and working draft assemblies for a large collection of genomes. It is also a portal site to the ENCODE and Neandertal projects.
This database provides following tools;
1) The Genome Browser zooms and scrolls over chromosomes, showing the work of annotators worldwide.
2) The gene Sorter shows expression, homology and other information on groups of genes that can be related in many ways.
3) Blat quickly maps your sequence to the genome.
4) The Table Browser provides convenient access to the underlying database.
5) Visigene lets you browse through a large collection of in situ mouse and frog images to examine expression patterns.
6) Genome Graphs allows you to upload and display genome-wide data sets.
Source: NBDC
Record maintainer: Integbio Database Catalog
Record license: Creative Commons CC0 license

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