J-GLOBAL ID:201410060386016459   Research Resource code:NBDC01020 Update date:Apr. 21, 2014

ASAP II: the Alternative Splicing Annotation Project II

ASAP II: the Alternative Splicing Annotation Project II
Owning Organization:
  • University of California, Los Angeles
Resource classification: Data,Database
Tag (subject)  (1): Genome/Gene
Tag (data type)  (2): Sequence ,  Classification
Species (14): Homo sapiens (NCBI Taxonomy ID: 9606) ,  Mus musculus (NCBI Taxonomy ID: 10090) ,  Rattus norvegicus (NCBI Taxonomy ID: 10116) ,  Xenopus tropicalis (NCBI Taxonomy ID: 8364) ,  Gallus gallus (NCBI Taxonomy ID: 9031) ,  Bos taurus (NCBI Taxonomy ID: 9913) ,  Canis lupus familiaris (NCBI Taxonomy ID: 9615) ,  Caenorhabditis elegans (NCBI Taxonomy ID: 6239) ,  Danio rerio (NCBI Taxonomy ID: 7955) ,  Drosophila melanogaster (NCBI Taxonomy ID: 7227) ,  Takifugu (NCBI Taxonomy ID: 31032) ,  Aedes aegypti (NCBI Taxonomy ID: 7159) ,  Apis mellifera (NCBI Taxonomy ID: 7460) ,  Anopheles gambiae (NCBI Taxonomy ID: 7165)
ASAP II is a database of alternative splicing information coming from genomics and proteomics. It provides precise gene exon-intron structure, alternative splicing, tissue specificity of alternative splice forms, and protein isoform sequences resulting from alternative splicing. As for human, EST libraries are classified and included into tissue and cancer classification, and lists of tissue & cancer (normal) specific alternatively spliced genes are calculated. ASAP II can be easily integrated with pygr (the Python Graph Database Framework for Bioinformatics) and its powerful features such as graph query, multi-genome alignment query and etc. Furthermore, it can help biologists design probe sequences for distinguishing specific mRNA isoforms. This database can be searched by several different criteria such as gene symbol, gene name and ID (Unigene, GenBank etc.).
Source: NBDC
Record maintainer: Integbio Database Catalog
Record license: Creative Commons CC0 license

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