J-GLOBAL ID:201410064061951122   Research Resource code:NBDC00374 Update date:Feb. 04, 2019

ATTED-II: Arabidopsis thaliana trans-factor and cis-element prediction database

ATTED-II: Arabidopsis thaliana trans-factor and cis-element prediction database
Owning Organization:
Resource classification: Database
Tag (subject)  (2): Genome/Gene ,  cDNA/EST
Tag (data type)  (2): Expression ,  Interaction/Pathway
Species (9): Arabidopsis thaliana (NCBI Taxonomy ID: 3702) ,  Oryza sativa (NCBI Taxonomy ID: 4530) ,  Glycine max (NCBI Taxonomy ID: 3847) ,  Zea mays (NCBI Taxonomy ID: 4577) ,  Solanum lycopersicum (NCBI Taxonomy ID: 4081) ,  Brassica rapa (NCBI Taxonomy ID: 3711) ,  Vitis vinifera (NCBI Taxonomy ID: 29760) ,  Populus trichocarpa (NCBI Taxonomy ID: 3694) ,  Medicago truncatula (NCBI Taxonomy ID: 3880)
ATTED-II is a coexpression database for Arabidopsis and other plant species. It stores calculated coexpression data based on microarray data and RNAseq data from AtGenExpress (TAIR), ArrayExpress and DDBJ. Mutual rank (MR) index is used as a coexpression measure, shows a higher predictive power for gene function than the Pearson’s correlation coefficient (PCC). ATTED-II provides a list of coexpressed genes and their orthologous for a query gene. NetworkDrawer tool provides drawing of gene networks in multiple query genes. The coexpression data are downloadable from Bulk download page.
Source: NBDC
Record maintainer: Integbio Database Catalog
Record license: Creative Commons CC0 license

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