J-GLOBAL ID:201410068260843440   Research Resource code:NBDC00094 Update date:Jun. 17, 2013


Owning Organization:
  • University of California
Resource classification: Data,Database
Tag (subject)  (1): cDNA/EST
Tag (data type)  (2): Sequence ,  Expression
Species (8): Hordeum vulgare (NCBI Taxonomy ID: 4513) ,  Brachypodium (NCBI Taxonomy ID: 15367) ,  Manihot esculenta (NCBI Taxonomy ID: 3983) ,  Citrus (NCBI Taxonomy ID: 2706) ,  Musa (NCBI Taxonomy ID: 4640) ,  Glycine max (NCBI Taxonomy ID: 3847) ,  Oryza sativa (NCBI Taxonomy ID: 4530) ,  Triticum aestivum (NCBI Taxonomy ID: 4565)
HarvEST is a database and viewing tools for EST in the following organisms: Barley, Brachypodium, Cassava, Citrus, Coffee, Cowpea, Musa (banana/plantain), Soybean, Rice, Wheat. This database contains all EST sequences which have been quality trimmed, cleaned of vector, and assembled using CAP3 with quality values. It includes an ACE file viewer that allows the user to examine the sequence alignment and readily determine where individual sequences reliably deviate from a consensus sequence, including SNPs. Key features of HarvEST include: a choice of assemblies, sequence alignment viewing, synteny displays (available only in Windows versions), archived BLAST hit information, unigene export, Boolean searching with user-defined quantitative settings, and various other searching, reporting and export functions. The unigene export feature is able to be applied to entire assemblies, individual libraries, or any combination of libraries.
Source: NBDC
Record maintainer: Integbio Database Catalog
Record license: Creative Commons CC0 license

Return to Previous Page