Rchr
J-GLOBAL ID：201501026218631350
Update date: Jul. 05, 2024
SUENAGA Atsushi
スエナガ アツシ | SUENAGA Atsushi
Research field (3)：
Computational science
, Biophysics
, Structural biochemistry
Research keywords (4)：
Protein
, In Silico drug discovery
, Molecular dynamics
, Molecular simulation
Papers (44)：
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Ryoma Sato, Koji Suzuki, Yuichi Yasuda, Atsushi Suenaga, Kazuhiko Fukui. RNAapt3D: RNA aptamer 3D-structure modeling database. Biophysical Journal. 2022. 121. 1-7
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Kazuya Jibiki, Takashi S. Kodama, Atsushi Suenaga, Yota Kawase, Noriko Shibazaki, Shin Nomoto, Seiya Nagasawa, Misaki Nagashima, Shieri Shimodan, Renan Kikuchi, et al. Importin α2 association with chromatin: Direct DNA binding via a novel DNA-binding domain. Genes to Cells. 2021. 26. in Press. 945-966
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Noriaki Okimoto, Atsushi Suenaga, Makoto Taiji. Evaluation of protein-ligand affinity prediction using steered molecular dynamics simulations. JOURNAL OF BIOMOLECULAR STRUCTURE & DYNAMICS. 2017. 35. 15. 3221-3231
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Kazutaka Araki, Atsushi Suenaga, Hidewo Kusano, Riko Tanaka, Tomohisa Hatta, Tohru Natsume, Kazuhiko Fukui. Functional profiling of asymmetrically-organized human CCT/TRiC chaperonin. Biochemical and Biophysical Research Communications. 2016. 481. 232-238
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Yutaka Kuroda, Atsushi Suenaga, Yuji Sato, Satoshi Kosuda and Makoto Taiji. All-atom molecular dynamics analysis of multi-peptide systems reproduces peptide solubility in line with experimental observations. Scientific Reports. 2016. 6. 19479
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MISC (1)：
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Akihiko Nishikimi, Takehito Uruno, Xuefeng Duan, Qinhong Cao, Yuji Okamura, Takashi Saitoh, Nae Saito, Shunsuke Sakaoka, Yao Du, Atsushi Suenaga, et al. Blockade of Inflammatory Responses by a Small-Molecule Inhibitor of the Rac Activator DOCK2. CHEMISTRY & BIOLOGY. 2012. 19. 4. 488-497
Books (1)：
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Encyclopedia of bioinformatics
共立出版 2006
Lectures and oral presentations (4)：
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All-atom molecular dynamics analysis of peptide aggregation
(14th Annual meeting of Protein Science Society of Japan 2014)
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超高速分子動力学専用計算機のタンパク質機能解析への応用
(第二回並列情報処理イニシアチブセミナー 2006)
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超高速分子動力学専用計算機のタンパク質機能解析への応用
(第八回システムバイオロジー研究会 2005)
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タンパク質折りたたみ過程の分子動力学シミュレーション
(第三回超並列計算研究会 2001)
Education (2)：
- 1995 - 1998 Tokyo University of Science Graduate School of Industrial Science and Technology Department of Biological Science and Technology
- 1989 - 1993 Tokyo University of Science Facultyt of Industrial Science and Technology Department of Biological Sciences and Technology
Professional career (1)：
Work history (7)：
- 2013/04 - 2015/03 National Institute of Advanced Industrial Science and Technology Molecular Profiling Research Center for Drug Discovery Invited Senior Research Scientist
- 2011/04 - 2013/03 National Institute of Advanced Industrial Science and Technology Computational Biology Research Center Invited Senior Research Scientist
- 2010/10/01 - 2011/03/31 The Institute of Physical and Chemical Research Systems and Structural Biology Center Research Scientist
- 2008/04/01 - 2010/09/30 The Institute of Physical and Chemical Research Advanced Sciences Institute ASI Research Scientist
- 2002/04/01 - 2008/03/31 The Institute of Physical and Chemical Research Genomic Sciences Center Research Scientist
- 2001/04 - 2002/03 National Institute of Advanced Industrial Science and Technology Computational Biology Research Center AIST Research Staff
- 1998/10/01 - 2001/03/31 The Institute of Physical and Chemical Research Advanced Computing Center Special Postdoctral Researcher
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Awards (3)：
- 2010 - Chem-Bio Informatics Society Best Poster Award (Chem-Bio informatics Society) Strategy for structure-based peptide design
- 2006 - Association for computing Machinery Gordon Bell Prize Honorable Mention: Peak Performance A 185 Tflops simulation of amyloid-forming peptides from Yeast prion Sup35 with the special-purpose computer system MD-GRAPE3
- 2002 - Chem-Bio Informatics Society Best Paper Award (Chem-Bio Informatics Society) Molecular dynamics simulation of RNA polymerase
Association Membership(s) (1)：
Protein Science Society of Japan
