Hirakawa Hideki

ヒラカワヒデキ | Hirakawa Hideki

Affiliation and department：
Homepage URL (1)： https://kaken.nii.ac.jp/d/r/80372746.ja.html

Research field (1)： Genomics

Research keywords (18)：バイオインフォマティクス , タンパク質立体構造 , バイオインフォマテクス , 比較ゲノム , 遺伝子機能 , 酵素化学 , 機能部位 , 配列解析 , ゲノム比較 , SNP , グラム陽性細菌 , メタゲノム解析 , 加水分解酵素 , 発現制御 , ゲノム , 進化 , 遺伝子 , 発現解析

Research theme for competitive and other funds (39)：

2023 - 2028 Support activities to promote plant-climate feedbacks
2023 - 2028 Unraveling the Gene Regulatory Mechanisms of Plant Phenology
2022 - 2028 Platform for Advanced Genome Science
2023 - 2026 New developlents of breeding and evolutionary studies taken advantage of using information of porotein three-dimensional structures by Alphafold2
2023 - 2026 Elucidation of the genetic mechanisms in the resistant locus towards the understanding of the resistance mechanisms against pine wilt disease

2023 - 2026 変異系統を用いたカラマツ雌花着花の原因遺伝子の特定とその発現制御機構の解明

2022 - 2026 Development of functional SNPs of crops and its application for identification of useful genes

2018 - 2021 Extensive characterization of domestication-related genes in buckwheat by utilizing the genetic resource of Yunnan province, China

2018 - 2021 Molecular mechanism for breaking down self-incompatibility in buckwheat

2018 - 2021 Molecular mechanisms of night-length recognition in photoperiodic flowering of chrysanthemum

2018 - 2021 Studies on the masculinization mechanism of spinach.

2018 - 2021 How hydrangea create two types of flowers?

2017 - 2021 Genetic diversity of root-knot nematode effector proteins

2016 - 2021 先進ゲノム解析研究推進プラットフォーム

2017 - 2020 Mechanism of seed enlargement during the Jomon period

2017 - 2020 Development of core collocation in garlic genetic resources through integrated omics analysis and its evaluation for functionality

2017 - 2020 Epigenetics analysis for determination of floral patterns in each cell

2017 - 2020 New insight into plant acid tolerance: physiological and molecular mechanisms of acid tolerance through mycorrhizal formation

2017 - 2020 Analysis of male sterility associated gene networks between mitochondrial and nuclear genomes in the cultivated strawberry

2017 - 2020 Study of the low-temperature dependent flowering in wild Dianthus species

2016 - 2019 Seasonal Variability in Dormancy and Flowering Competence in Chrysanthemum

2015 - 2019 Integrated genomics on important medicinal plants in Leguminosae

2015 - 2018 Linkage map construction based on LD and its application to polyploid species

2015 - 2018 Tracing the evolutionary process of plant-microbe interaction

2014 - 2018 Characterization of molecular evolution of plant isoquinoline alkaloid biosynthesis and its application to metabolic engineering

2014 - 2017 Application of integrated omics analyses by using Allium bio-resources to onion breeding

2014 - 2017 Development of a novel bioinformatics method to analyze big genome sequence data for efficient knowledge discovery

2014 - 2017 Functional analysis of physiological function-unknown or novel quinoprotein to seek an enzyme generating reduced PQQ

2014 - 2017 Comparative genomics and phenome analysis of closely related Acetic acid bacteria

2013 - 2016 Genomic information of an endophyte of Lotus japonicus to facilitate investigation on the symbiosis

2012 - 2016 Infererence of the SNP effects on gene functions

2010 - 2016 Platform of large scale and high quality genomics and bioinformatics: Towards the advancement of genome sciences in academia

2009 - 2011 Regulation of CARMA1 signaling and its role in immune homeostasis

2008 - 2010 Secretion mechanism of pathogenic proteases and adhesions in the periodontal pathogen Porphyromonas gingivalis.

2007 - 2009 Metagenome analysis for the classification of enzymes related to hydrolysis of bacterial cell wall by sequential and enzymatic analysis

2005 - 2009 Computational Biology for complicated genome system

2004 - 2006 グラム陽性細菌におけるオルソログ遺伝子の分布の比較に関する研究

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Papers (226)：

Kenta Shirasawa, Yuta Aoyagi Blue, Kentaro Mishima, Hideki Hirakawa, Tomonori Hirao. Chromosomal evolution and speciation inferred from chromosome-scale genome assemblies in three Cupressaceae species. 2026
Sayako Kushino, Nobuyuki Mizuno, Kenta Shirasawa, Yasufumi Kobayashi, Yasunari Fujita, Kazusa Nishimura, Mariko Ueno, Naoko Takeuchi, Hiroki Saito, Shunsuke Adachi, et al. Discovery of a novel <i>CYP76AD1-DODA1</i> gene cluster associated with betalain pigmentation in quinoa. CYTOLOGIA. 2025. 90. 4. 227-238
Yuta B. Aoyagi, Riki Shimada, Hideki Hirakawa, Atsushi Toyoda, Hidehiro Toh, Sachiko Isobe, Naoyuki Tajima, Kenta Shirasawa, Tokumasa Horiike, Hiroshi Fujii, et al. Chromosome-level genome assembly of the gerbera ( Gerbera hybrida ) using HiFi long-read and Hi-C technologies. 2025
Daichi Kurata, Tomohisa Tsuzaki, Fumi Tatsuzawa, Kenta Shirasawa, Hideki Hirakawa, Munetaka Hosokawa. Unstable anthocyanin pigmentation in Streptocarpus sect. Saintpaulia (African violet) is due to transcriptional selectivity of a single MYB gene. The New phytologist. 2025. 247. 3. 1426-1444
Yuta Aoyagi Blue, Hideki Hirakawa, Youko Oono, Shingo Nakamura. Exploring differentially expressed genes and associated biological processes across embryos with different seed dormancy in barley (Hordeum vulgare). Crop Science. 2025. 65. 1

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MISC (403)：

小林安文, 永利友佳理, 藤井健一朗, 藤井健一朗, 藤田泰成, 平川英樹, 平川英樹, 白澤健太, 西村和紗, OROS R, et al. アンデス高地で栽培化された高地型キヌア系統の高精度ゲノム配列情報. 国際農林水産業研究成果情報(Web). 2025. 32
黒谷賢一, 平川英樹, 白澤健太, 田桐昂也, 森萌恵, ABEDELAZIZ Ramadan, 市橋泰範, 鈴木孝征, 谷澤靖洋, 三浦謙治, et al. Nicotianabenthamiana genome and transcriptome database construction. 日本植物生理学会年会(Web). 2025. 66th
久篠沙耶子, 西村和紗, 水野信之, 上野まりこ, 竹内直子, 中野龍平, 岩橋優, 小林安文, 藤田泰成, 白澤健太, et al. Analysis of Natural Variations Controlling Red Pigmentation in Quinoa Leaves. 熱帯農業研究. 2025. 18. Extra Issue 1
倉田大地, 平川英樹, 白澤健太, 細川宗孝, 細川宗孝. Identification of methylation sites associated with transcriptional selectivity of the MYB gene in Saintpaulia. 園芸学研究別冊. 2025. 24. 1
横谷尚起, 長谷川嘉則, 香西雄介, 平川英樹, 平川英樹, 磯部祥子, 磯部祥子. Time-course transcriptome analysis of Clavibacter michiganensis subsp. michiganensis during infection. 日本植物病理学会大会プログラム・講演要旨予稿集. 2025. 2025

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Patents (1)：

キク白さび病抵抗性を判定する方法、製造方法、分子マーカー、キク白さび病抵抗性関連遺伝子、キク白さび病抵抗性のキク属植物

Lectures and oral presentations (3)：

針葉樹4種のゲノム情報データベースBreedingTrees-by-Genesの構築
(第134回日本森林学会大会 2023)
菌根菌叢・細菌叢同定ウェブインターフェースの開発
(第17回日本ゲノム微生物学会年会 2023)
Construction of spinach pseudomolecules to enhance breeding efficiency
(2020)

Education (3)：

1996 - 1999 Kyushu University
1994 - 1996 Kyushu University
1990 - 1994 Kyushu University School of Agriculture

Work history (14)：

2024/05 - 現在 Kyushu University Graduate School of Bioresource and Bioenvironmental Sciences
2021/08 - 現在 Japan Aerospace Exploration Agency
2022/04 - 2024/04 Kazusa DNA Research Institute
2019/04 - 2024/03 Tohoku University
2018/03 - 2022/03 Kazusa DNA Research Institute

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