Art
J-GLOBAL ID:201502218738833207
Reference number:15A0863888
A Memory Efficient Short Read De Novo Assembly Algorithm
メモリ効率の良いde novoアセンブリアルゴリズム
Author (5):
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Material:
Volume:
2015
Issue:
BIO-41
Page:
VOL.2015-BIO-41,NO.6 (WEB ONLY)
Publication year:
Mar. 13, 2015
JST Material Number:
U0451A
Document type:
Proceedings
Article type:
短報
Country of issue:
Japan (JPN)
Language:
JAPANESE (JA)
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Semi thesaurus term:
Thesaurus term/Semi thesaurus term
Keywords indexed to the article.
All keywords is available on JDreamIII(charged).
On J-GLOBAL, this item will be available after more than half a year after the record posted. In addtion, medical articles require to login to MyJ-GLOBAL.
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JST classification (2):
JST classification
Category name(code) classified by JST.
Structure and chemistry of genes
, Basics of graph theory
Reference (8):
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Zerbino, D. R. and Birney, E.: Velvet: algorithms for de novo short read assembly using de Bruijn graphs, Genome Res., Vol. 18, No. 5, pp. 821-829 (2008).
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Simpson, J. T., Wong, K., Jackman, S. D., Schein, J. E., Jones, S. J. and Birol, I.: ABySS: A parallel assembler for short read sequence data, Genome Res., Vol. 19, No. 6, pp. 1117-1123 (2009).
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Li, R., Zhu, H., Ruan, J., Qian, W., Fang, X., Shi, Z., Li, Y., Li, S., Shan, G., Kristiansen, K., Li, S., Yang, H., Wang, J. and Wang, J.: De novo assembly of human genomes with massively parallel short read sequencing, Genome Res., Vol. 20, No. 2, pp. 265-272 (2010).
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Conway, T. C. and Bromage, A. J.: Succinct data structures for assembling large genomes, Bioinformatics, Vol. 27, No. 4, pp. 479-486 (2011).
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Bowe, A., Onodera, T., Sadakane, K. and Shibuya, T.: Succinct de Bruijn graphs, WABI, Lecture Notes in Computer Science, Vol. 7534, Springer, pp. 225-235 (2012).
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