J-GLOBAL ID:201510079876395504   Research Resource code:NBDC01435 Update date:Mar. 10, 2015

Cassava Online Archive

Cassava Online Archive
Owning Organization:
  • RIKEN Center for Sustainable Resource Science
Resource classification: Database
Tag (subject)  (3): Genome/Gene ,  cDNA/EST ,  Genetic variation
Tag (data type)  (1): Sequence
Species (5): Manihot esculenta (NCBI Taxonomy ID: 3983) ,  Ricinus communis (NCBI Taxonomy ID: 3988) ,  Populus trichocarpa (NCBI Taxonomy ID: 3694) ,  Vitis vinifera (NCBI Taxonomy ID: 29760) ,  Arabidopsis thaliana (NCBI Taxonomy ID: 3702)
The Cassava Online Archive is a database about cassava mRNA sequences and ESTs currently available from NCBI (Genbank/EMBL/DDBJ) and their annotations. This database contains annotations based on the similarity search results collated from several protein databases and the similarity map results from the cassava (Manihot esculenta, Euphorbiaceae), castor bean (Ricinus communis, Euphorbiaceae), poplar (Populus trichocarpa, Salicaceae), grape (Vitis vinifera, Vitaceae), and Arabidopsis thaliana (Brassicaceae) genome sequences. It also contains domain organization as predicted by InterProScan and gene Ontology (GO) terms for improving the annotations.
This database allows to search with gene function, accession number, and sequence similarity (BLAST).
Source: NBDC
Record maintainer: Integbio Database Catalog
Record license: Creative Commons CC0 license

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