J-GLOBAL ID:201510093419033845   Research Resource code:NBDC01432 Update date:Mar. 10, 2015

ANISEED: Ascidian Network of In Situ Expression and Embryological Data

ANISEED: Ascidian Network of In Situ Expression and Embryological Data
Owning Organization:
  • Institut de Biologie du Développement de Marseille
Resource classification: Database
Tag (subject)  (1): Genome/Gene
Tag (data type)  (4): Sequence ,  Expression ,  Image/Movie ,  Bibliography/Documents
Species (7): Botryllus schlosseri (NCBI Taxonomy ID: 30301) ,  Ciona intestinalis (NCBI Taxonomy ID: 7719) ,  Ciona savignyi (NCBI Taxonomy ID: 51511) ,  Halocynthia aurantium (NCBI Taxonomy ID: 254849) ,  Halocynthia roretzi (NCBI Taxonomy ID: 7729) ,  Phallusia fumigata (NCBI Taxonomy ID: 395376) ,  Phallusia mammillata (NCBI Taxonomy ID: 59560)
ANISEED is a database about gene expression in Ascidian embryos. It contains detailed anatomical ontologies for Ascidian embryos, and quantitative geometrical descriptions of developing cells obtained from reconstructed three-dimensional (3D) embryos up to the gastrula stages. In this database, fully annotated gene model sets are linked to high-resolution spatial gene expression patterns in wild-type and experimentally manipulated conditions and to experimentally validated cis-regulatory regions imported from specialized databases or extracted from literature articles. This database allows searches using following categories:
1) Genome Annotations (genes, cDNA clones, cis-regulatory regions)
2) Anatomy (anatomical ontology, embryo scheme)
3) gene Expression & Function (expression data, phenotypes)
4) Literature.
It also allows exploration by BLAST or genome browser.
Source: NBDC
Record maintainer: Integbio Database Catalog
Record license: Creative Commons CC0 license

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