Rchr
J-GLOBAL ID:201601010627507819   Update date: Jan. 30, 2024

Kawashima Takeshi

カワシマ タケシ | Kawashima Takeshi
Affiliation and department:
Homepage URL  (1): https://kaken.nii.ac.jp/d/r/10378531.ja.html
Research field  (3): Evolutionary biology ,  Systems genomics ,  Genomics
Research keywords  (21): Evolution of Metabolic Pathways ,  Hemichordates ,  Acornworm ,  進化 ,  カタユウレイボヤ ,  遺伝子発現解析 ,  脊索動物門 ,  被嚢動物 ,  海産無脊椎動物 ,  比較ゲノム ,  ショートリード・シーケンサー ,  ナメクジウオ ,  バイオインフォマティクス ,  ホヤ ,  遺伝子発現情報 ,  被嚢細胞 ,  トランスクリプトーム ,  染色体地図 ,  被嚢 ,  遺伝的多型 ,  Ciona intestinalis
Research theme for competitive and other funds  (7):
  • 2018 - 2023 複雑ネットワークの視点からの新規細胞タイプの進化
  • 2019 - 2022 Shell museomics: Experimental study to utilize museum collections
  • 2017 - 2021 Creating reference genomes of lactic acid bacteria and Bifidobacteria
  • 2010 - 2012 Transcriptome analysis for tunic cells of the ascidian, Ciona intestinalis
  • 2005 - 2006 ホヤとナメクジウオの比較ゲノム解析
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Papers (59):
  • Tom Humphreys, Keith Weiser, Asuka Arimoto, Akane Sasaki, Gene Uenishi, Brent Fujimoto, Takeshi Kawashima, Kekoa Taparra, Janos Molnar, Noriyuki Satoh, et al. Ancestral Stem Cell Reprogramming Genes Active in Hemichordate Regeneration. Frontiers in Ecology and Evolution. 2022. 10
  • Maria Satti, Monica Modesto, Akihito Endo, Takeshi Kawashima, Paola Mattarelli, Masanori Arita. Host-Diet Effect on the Metabolism of Bifidobacterium. GENES. 2021. 12. 4
  • Rutger A Vos, Toshiaki Katayama, Hiroyuki Mishima, Shin Kawano, Shuichi Kawashima, Jin-Dong Kim, Yuki Moriya, Toshiaki Tokimatsu, Atsuko Yamaguchi, Yasunori Yamamoto, et al. BioHackathon 2015: Semantics of data for life sciences and reproducible research. F1000Research. 2020. 9. 136-136
  • Mehwish Noureen, Ipputa Tada, Takeshi Kawashima, Masanori Arita. Rearrangement analysis of multiple bacterial genomes. BMC bioinformatics. 2019. 20. Suppl 23. 631-631
  • Toshiaki Katayama, Shuichi Kawashima, Gos Micklem, Shin Kawano, Jin-Dong Kim, Simon Kocbek, Shinobu Okamoto, Yue Wang, Hongyan Wu, Atsuko Yamaguchi, et al. BioHackathon series in 2013 and 2014: improvements of semantic interoperability in life science data and services [version 1; peer review: 2 approved with reservations]. F1000Research. 2019. 8
more...
MISC (15):
  • 川島 武士, 新里 宙也. クラゲのゲノムが語る進化の"取捨選択" (特集 驚異のクラゲ). 科学. 2009. 79. 4. 405-408
  • 川島 武士, 將口 栄一, 佐藤 ゆたか. 発生・進化メカニズム ホヤ発生ゲノム科学の新展開 (ゲノムから生命システムへ) -- (ゲノムから生物学). 蛋白質核酸酵素. 2005. 50. 16. 2153-2159,2032
  • 濱口 誠, 佐藤 矩行, 川島 武士. ホヤのゲノムから見た脊索動物の進化 (特集・分子進化学の現在). 生体の科学. 2004. 55. 3. 247-251
  • Kawashima T., Kawashima S., Ishikawa H., Kawamura H., Nishikata T., Makabe K.W. A group of zygotic genes expressed in B7.6 endodermalstrand cells in the ascidian, Halocynthia roretzi(Developmental Biology)Proceedings of the Seventy-First Annual Meeting of the Zoological Society of Japan :. Zoological science. 2000. 17. 66-66
  • Kawashima T., Sasakura Y., Ogasawara M., Makabe K.W. Musashi homologue in the ascidian, H.roretzi, is expressed in the neural tissue of the embryo(Developmental Biology)(Proceedings of the Sixty-Ninth Annual Meeting of the Zoological Society of Japan) :. Zoological science. 1998. 15. 81-81
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Books (8):
  • 動物の事典
    朝倉書店 2020 ISBN:9784254171662
  • Encyclopedia of bioinformatics and computational biology
    Elsevier 2019 ISBN:9780128114148
  • Encyclopedia of Zoology
    2018
  • Encyclopedia of Bioinformatics and Computational Biology - 1st Edition
    Elsevier 2018
  • 次世代シーケンサー活用術: トップランナーの最新研究事例に学ぶ
    化学同人 2015
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Lectures and oral presentations  (8):
  • オープンサイエンスの代表例DDBJの一員として動物のゲノムを比較解析
    (オムニバスセミナー 2019(R1) 2019)
  • Research for the evolution of metabolic pathways utilizing metabolome data
    (The 16th Korea-Japan-China Bioinformatics Symposium 2018 2018)
  • Highlight Track: Independent evolution of genomic characters during major metazoan transitions
    (Highlight Track 2017)
  • Think about the relationship between zoology and information science in the coming future
    (To pioneer the boundary area between zoology and informatics 2017)
  • Development of a method for annotation of natural compound annotation using transcriptome data
    (2017)
more...
Education (3):
  • 1996 - 2001 Graduate School of Science, Kyoro Univ.
  • 1992 - 1996 Osaka Prefecture University College of Engineering
  • 雲雀丘学園高等学校
Professional career (1):
  • 博士(理学) (京都大学理学研究科)
Work history (12):
  • 2017/03 - 現在 National Institute of Genetics Center for Information Biology Assistant Professor
  • 2016/04 - 2017/02 National Institute of Genetics Center for Information Biology Postdoctoral Researcher
  • 2015/04 - 2016/03 University of Tsukuba Faculty of Life and Environmental Sciences Research Associate
  • 2014/04 - 2015/03 Okinawa Institute of Science and Technology Marinegenomics Unit Staff Scientist III Group Leader
  • 2013/04 - 2015/03 NINS, National Institute of Basic Biology Division of Evolutionary Biology Visiting Scholar
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Committee career (5):
  • 2017/04 - 現在 日本バイオインフォマティクス学会 理事
  • 2014/04 - 2019/03 日本バイオインフォマティクス学会 幹事
  • 2012/04 - 2016/03 日本バイオインフォマティクス学会 理事
  • 2012/01 - 2013/12 日本進化学会 庶務幹事
  • 2011/05 - 2013/03 生命情報科学若手の会 スタッフ
Association Membership(s) (4):
JAPAN GEOSCIENCE UNION ,  JAPANESE SOCIETY FOR BIOINFORMATICS ,  SOCIETY OF EVOLUTIONARY STUDIES, JAPAN ,  THE ZOOLOGICAL SOCIETY OF JAPAN
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