Art

J-GLOBAL ID：201602254367211835   Reference number：16A1215860

Accuracy of imputation of single nucleotide polymorphism marker genotypes from low-density panels in Japanese Black cattle

黒毛和種の低密度マーカーパネルからの単一ヌクレオチド多型マーカ遺伝子型の帰属の精度

Author (7)： OGAWA Shinichiro (Kyoto Univ., Kyoto) ,  MATSUDA Hirokazu (Kyoto Univ., Kyoto) ,  TANIGUCHI Yukio (Kyoto Univ., Kyoto) ,  WATANABE Toshio (National Livestock Breeding Center) ,  TAKASUGA Akiko (National Livestock Breeding Center) ,  SUGIMOTO Yoshikazu (Shirakawa Inst. of Animal Genetics, Fukushima, JPN) ,  IWAISAKI Hiroaki (Kyoto Univ., Kyoto)
Material： Animal Science Journal  (Anim Sci J)
Volume： 87  Issue： 1  Page： 3-12  Publication year： Jan. 2016 
JST Material Number： W1430A  ISSN： 1344-3941  Document type： Article
Article type： 原著論文  Country of issue： United States (USA)  Language： ENGLISH (EN)

Thesaurus term： *Japanese Black Cattle ,...
Semi thesaurus term： linkage(genetics) ,...

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JST classification (2)： Animal breeding  (FD01020R) ,  Structure and chemistry of genes  (EC02020U)

Reference (31)：

• Badke YM, Bates RO, Ernst CW, Schwab C, Fix J, Van Tassell CP, Steibel JP. 2013. Methods of tagSNP selection and other variables affecting imputation accuracy in swine. BMC Genetics 14, 8.
• Berry DP, McClure MC, Mullen MP. 2014. Within- and across-breed imputation of high-density genotypes in dairy and beef cattle from medium- and low-density genotypes. Journal of Animal Breeding and Genetics 131, 165-172.
• Boichard D, Chung H, Dassonneville R, David X, Eggen A, Fritz S, et al. for the Bovine LD Consortium. 2012. Desigh of a bovine low-density SNP array optimized for imputation. PLoS ONE 7, e34130.
• Browning SR, Browning BL. 2007. Rapid and accurate haplotype phasing and missing-data inference for whole-genome association studies by use of localized haplotype clustering. The American Journal of Human Genetics 81, 1084-1097.
• Browning SR, Browning BL. 2011. Haplotype phasing: existing methods and new developments. Nature Reviews Genetics 12, 703-714.

Terms in the title (6)： 黒毛和種 ,  低密度 ,  マーカー ,  単一ヌクレオチド多型 ,  マーカ ,  遺伝子型