Rsrc
J-GLOBAL ID:201610010463298649   Research Resource code:NBDC01558 Update date:Jan. 19, 2016

ChIP-Atlas

ChIP-Atlas
Owning Organization:
Resource classification: Database
Tag (subject)  (2): Genome/Gene ,  Protein
Tag (data type)  (1): Interaction/Pathway
Species (5): Homo sapiens (NCBI Taxonomy ID: 9606) ,  Mus musculus (NCBI Taxonomy ID: 10090) ,  Drosophila melanogaster (NCBI Taxonomy ID: 7227) ,  Caenorhabditis elegans (NCBI Taxonomy ID: 6239) ,  Saccharomyces cerevisiae (NCBI Taxonomy ID: 4932)
Overview:
ChIP-Atlas is an integrative database for visualizing and exploiting public ChIP-seq data. This database covers almost all public ChIP-seq data submitted to the SRA (Sequence Read Archives) in NCBI, DDBJ or ENA. ChIP-Atlas is composed of 4 main features;
1) Peak Browser
It graphically visualizes protein bindings on given genomic loci with genome browser (IGV).
2) Target genes
It predicts target genes bound by given transcription factors.
3) Colocalization
It predicts partner proteins colocalizing with given transcription factors.
4) in silico ChIP
It predicts proteins bound to given genomic loci and genes.
Source: NBDC

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