Shiwa Yuh

Research field (1)： Genomics

Research keywords (3)：ゲノム解析 , バイオインフォマティクス , 微生物

Research theme for competitive and other funds (3)：

2020 - 2023 真核生物のリボソーム合成制御の新規機構:ラパマイシン結合タンパク質の真の役割
2017 - 2019 Development a cloud-based analysis environment that enables bioinformatics analysis for nanopore sequencer in the field
2013 - 2016 The great earthquake stress is associated to dysregulation of atherosclerosis-related genes in general population.

Papers (104)：

Hiroya Nishimura, Yuh Shiwa, Satoru Tomita, Akihito Endo. Microbial composition and metabolic profiles during machine-controlled intra-factory fermentation of cocoa beans harvested in semitropical area of Japan. Bioscience of microbiota, food and health. 2024. 43. 1. 29-42
Yuuki Kobayashi, Ayane Kayamori, Keita Aoki, Yuh Shiwa, Minenosuke Matsutani, Nobuyuki Fujita, Takashi Sugita, Wataru Iwasaki, Naoto Tanaka, Masako Takashima. Chromosome-level genome assemblies of Cutaneotrichosporon spp. (Trichosporonales, Basidiomycota) reveal imbalanced evolution between nucleotide sequences and chromosome synteny. BMC Genomics. 2023. 24. 1. 653-653
Akiko Soma, Atsushi Kubota, Daisuke Tomoe, Yoshiho Ikeuchi, Fujio Kawamura, Hijiri Arimoto, Yuh Shiwa, Yu Kanesaki, Hideaki Nanamiya, Hirofumi Yoshikawa, et al. yaaJ, the tRNA-Specific Adenosine Deaminase, Is Dispensable in Bacillus subtilis. Genes. 2023. 14. 8. 1515-1515
Yuh Shiwa, Tomoya Baba, Maria A Sierra, JangKeun Kim, Christopher E Mason, Haruo Suzuki. Evaluation of rRNA depletion methods for capturing the RNA virome from environmental surfaces. BMC research notes. 2023. 16. 1. 142-142
Dewa A P Rasmika Dewi, Yuh Shiwa, Krista Ryon, Christopher E Mason, Tetsuya Matsumoto, Haruo Suzuki. Urban Microbiomes in Narita, Chiba, Japan: Shotgun Metagenome Sequences of a Train Station. Microbiology resource announcements. 2023. 12. 1. e0109222

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MISC (66)：

法橋亜都子, 柿山明香, 志波優, 鈴木英梨香, 加賀千晶, 小林稔秀, 野本康二, 水澤直美. 一般家庭で飼養されている健康な犬に対するガラクトオリゴ糖の機能性評価. ペット栄養学会誌. 2023. 26. Suppl. suppl_29-suppl_30
小林裕樹, 栢森綺音, 青木敬太, 志波優, 松谷峰之介, 藤田信之, 杉田隆, 岩崎渉, 大熊盛也, 田中尚人, et al. Analyses on genomic evolution and speciation of Basidiomycota yeasts based on whole-genome information. 日本分子生物学会年会プログラム・要旨集(Web). 2023. 46th
木原駿太, 山本紘輔, 志波優, 菊野日出彦, 松谷峰之介, 志和地弘信. Bacterial Community Analysis of Water Yam (Dioscorea alata L.) Under Different Water Condition. 日本微生物生態学会大会(Web). 2023. 36th
中村美春, 島村直希, 竹内建樹, 中林幸佳, 志波優, 松谷峰之介, 古久保哲朗, 知花博治, 笠原浩司. Regulatory mechanism for transcription of ribosomal protein genes in Candida glabrata. 日本分子生物学会年会プログラム・要旨集(Web). 2023. 46th
溝口明日香, 安藤悠里, 田口啓護, 志波優, 松谷峰之介, 片岡浩介, 笠原浩司. Elucidation of function of FKBP12, target of immunosuppressive compounds rapamycin and FK506 in human cells. 日本分子生物学会年会プログラム・要旨集(Web). 2023. 46th

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Books (4)：

Lectures and oral presentations (31)：

ジネンジョ (Dioscorea japonica) の植物生育促進細菌の探索
(日本土壌微生物学会2022年度大会(オンライン開催) 2022)
メタ 16S 解析を用いたジネンジョの植物生育促進細菌の探索
(日本微生物生態学会第 34 回大会(オンライン開催) 2021)
サイクロン法で捕集された微小粒子状物質 (PM2.5) のメタゲノム解析の試み
(日本微生物生態学会第 34 回大会(オンライン開催) 2021)
サイクロン法で採集された微小粒子状物質(PM2.5)からの細菌群集解析の試み
(第15回日本ゲノム微生物学会年会 2021)
Transcriptional analysis of carbon catabolite repression (CCR) in an efficient L-(+)-lactic acid-producing bacterium <i>Enterococcus mundtii</i> QU 25 grown in media with combinations of cellobiose, xylose, and glucose
(BACELL2020 2020)

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