Abugessaisa Imad

Affiliation and department：
Job title： Senior research scientist
Homepage URL (1)： http://www.ims.riken.jp/labo/64/people.html

Research field (1)： Genomics

Research keywords (4)： Single-cell RNA-seq , Genomics , mycetoma , Human aging

Research theme for competitive and other funds (2)：

2020 - 2023 Mapping the Madurella mycetomatis pathogen and host responses during and after antifungal treatment to identify prognostic therapeutic markers for mycetoma
2020 - 2022 MycEXomics:Development of field-friendly POC diagnostic test for the four most common causative agents of mycetoma

Papers (53)：

Imad Abugessaisa, Ri-Ichiroh Manabe, Tsugumi Kawashima, Michihira Tagami, Chitose Takahashi, Yasushi Okazaki, Stefania Bandinelli, Takeya Kasukawa, Luigi Ferrucci. OVCH1 Antisense RNA 1 is differentially expressed between non-frail and frail old adults. GeroScience. 2024. 46. 2. 2063-2081
Imad Abugessaisa, Akira Hasegawa, Shintaro Katayama, Juha Kere, Takeya Kasukawa. Computational approach to evaluate scRNA-seq data quality and gene body coverage with SkewC. STAR protocols. 2023. 4. 1. 102038-102038
Mathys Grapotte, Manu Saraswat, Chloé Bessière, Christophe Menichelli, Jordan A. Ramilowski, Jessica Severin, Yoshihide Hayashizaki, Masayoshi Itoh, Michihira Tagami, Mitsuyoshi Murata, et al. Author Correction: Discovery of widespread transcription initiation at microsatellites predictable by sequence-based deep neural network (Nature Communications, (2021), 12, 1, (3297), 10.1038/s41467-021-23143-7). Nature Communications. 2022. 13. 1
Chi Wai Yip, Chung-Chau Hon, Kayoko Yasuzawa, Divya M. Sivaraman, Jordan A. Ramilowski, Youtaro Shibayama, Saumya Agrawal, Anika V. Prabhu, Callum Parr, Jessica Severin, et al. Antisense-oligonucleotide-mediated perturbation of long non-coding RNA reveals functional features in stem cells and across cell types. Cell Reports. 2022. 41. 13. 111893-111893
Imad Abugessaisa, Akira Hasegawa, Shuhei Noguchi, Melissa Cardon, Kazuhide Watanabe, Masataka Takahashi, Harukazu Suzuki, Shintaro Katayama, Juha Kere, Takeya Kasukawa. SkewC: Identifying cells with skewed gene body coverage in single-cell RNA sequencing data. iScience. 2022. 25. 2. 103777-103777

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Books (5)：

Single Cell Databases: An Emerging and Essential Tool
2022 ISBN:9789811658129
Practical Guide to Life Science Databases
SPringer Nature 2022 ISBN:9789811658129
The FANTOM5 Computation Ecosystem: Genomic Information Hub for Promoters and Active Enhancers
Springer 2017
Genome annotation
Springer 2016
Molecular foundation of computational bioscience
Oxford University Press 2014

Education (11)：

2015 - 2015 Institute for Systems Biology, Seattle, USA Systems Biology of Disease
2015 - 2015 Stanford University School of Medicine Protégé
2010 - 2012 Karolinska Institutet Department of Medicine, Solna Postdoc
2012 - 2012 Principe Felipe Research Center, Spain High performance computing for next generation sequencing
2011 - 2012 Leadership management Institute Effective leadership program

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Professional career (2)：

Ph.D. (Linköping University)
M.Sc. (Linköping University)

Work history (8)：

2020/05 - 現在 RIKEN IMS Center for Integrative Medical Sciences
2014/03 - 2020/05 Karolinska Institutet Department of Medicine, Solna Associated
2018/04 - 2020/04 RIKEN Center for Integrative Medical Sciences, Research scientist
2014/03 - 2018/03 RIKEN RIKEN Center for Life Science Technologies Research scientist
2012/03 - 2014/02 Karolinska Institutet Department of Medicine, Solna Assistant prof(FOASS)

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