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J-GLOBAL ID：201702235262973757   Reference number：17A0127177

DFAST and DAGA: web-based integrated genome annotation tools and resources

DFASTとDAGA:Webベースの統合されたゲノム注釈ツールとリソース

Author (7)： TANIZAWA Yasuhiro (Department of Computational Biology and Medical Sciences, Graduate School of Frontier Sciences, The University of Tokyo, Chiba 277-8561, Japan) ,  TANIZAWA Yasuhiro (Center for Information Biology, National Institute of Genetics, Shizuoka 411-8540, Japan) ,  FUJISAWA Takatomo (Center for Information Biology, National Institute of Genetics, Shizuoka 411-8540, Japan) ,  KAMINUMA Eli (Center for Information Biology, National Institute of Genetics, Shizuoka 411-8540, Japan) ,  NAKAMURA Yasukazu (Center for Information Biology, National Institute of Genetics, Shizuoka 411-8540, Japan) ,  ARITA Masanori (Center for Information Biology, National Institute of Genetics, Shizuoka 411-8540, Japan) ,  ARITA Masanori (RIKEN Center for Sustainable Resource Science, Kanagawa 230-0045, Japan)
Material： Bioscience of Microbiota, Food and Health (Web)  (Biosci Microbiota Food Health (Web))
Volume： 35  Issue： 4  Page： 173-184(J-STAGE)  Publication year： 2016 
JST Material Number： U0398A  ISSN： 2186-3342  Document type： Article
Article type： 原著論文  Country of issue： Japan (JPN)  Language： ENGLISH (EN)

Thesaurus term： *lactic acid bacteria ,...
Semi thesaurus term： *Lactobacillus ,...

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Author keywords (6)： lactic acid bacteria ,  genome ,  annotation ,  database ,  Lactobacillus ,  Pediococcus

JST classification (2)： Research methods in genetics  (EC01020N) ,  Database systems  (JD03030U)

Reference (49)：

• 1. Cochrane G, Karsch-Mizrachi I, Takagi T, International Nucleotide Sequence Database Collaboration. 2016. The International Nucleotide Sequence Database Collaboration. Nucleic Acids Res 44 D1: D48-D50.
• 2. Kodama Y, Shumway M, Leinonen R, International Nucleotide Sequence Database Collaboration. 2012. The Sequence Read Archive: explosive growth of sequencing data. Nucleic Acids Res 40: D54-D56.
• 3. Nilsson RH, Ryberg M, Kristiansson E, Abarenkov K, Larsson KH, Kõljalg U. 2006. Taxonomic reliability of DNA sequences in public sequence databases: a fungal perspective. PLoS One 1: e59.
• 4. Bull MJ, Marchesi JR, Vandamme P, Plummer S, Mahenthiralingam E. 2012. Minimum taxonomic criteria for bacterial genome sequence depositions and announcements. J Microbiol Methods 89: 18-21.
• 5. Nakazato T, Ohta T, Bono H. 2013. Experimental design-based functional mining and characterization of high-throughput sequencing data in the sequence read archive. PLoS One 8: e77910.

Terms in the title (5)： Web ,  統合 ,  ゲノム注釈 ,  ツール ,  リソース