Rchr
J-GLOBAL ID:201801006323904398
Update date: Feb. 01, 2024
Mori Tomoya
モリ トモヤ | Mori Tomoya
Affiliation and department:
Job title:
Assistant Professor
Homepage URL (1):
https://kdb.iimc.kyoto-u.ac.jp/profile_private/ja.22dad5ec779719b8.html
Research field (1):
Biological, health, and medical informatics
Research keywords (4):
Spatial omics analysis
, Single-cell omics analysis
, Discrete algorithm
, Bioinformatics
Research theme for competitive and other funds (4):
- 2023 - 2026 空間オミクスに基づく生体組織ドメイン推定および解析法の確立
- 2019 - 2022 Development of cell trajectory inference and comparison algorithm based on single-cell omics data
- 2017 - 2019 Development of detailed cell classification and cell evaluation method based on DNA methylation
- 2014 - 2016 確率ブーリアンネットワークを用いた細胞内シグナル伝達機構のモデル化とその解
Papers (19):
-
Tomoya Mori, Toshiro Takase, Kuan-Chun Lan, Junko Yamane, Cantas Alev, Azuma Kimura, Kenji Osafune, Jun K. Yamashita, Tatsuya Akutsu, Hiroaki Kitano, et al. eSPRESSO: topological clustering of single-cell transcriptomics data to reveal informative genes for spatio-temporal architectures of cells. BMC Bioinformatics. 2023. 24. 1
-
Feiqi Wang, Tatsuya Akutsu, Tomoya Mori. Metrics for RNA Secondary Structure Comparison. Methods in molecular biology (Clifton, N.J.). 2023. 2586. 79-88
-
Tatsuya Akutsu, Tomoya Mori, Naotoshi Nakamura, Satoshi Kozawa, Yuhei Ueno, Thomas N Sato. On the complexity of tree edit distance with variables. 33rd International Symposium on Algorithms and Computation (ISAAC 2022). 2022. 248. 44:1-44:14
-
Reiichi Sugihara, Yuki Kato, Tomoya Mori, Yukio Kawahara. Alignment of single-cell trajectory trees with CAPITAL. Nature Communications. 2022. 13. 1
-
Tomoya Mori, Tatsuya Akutsu. Attractor detection and enumeration algorithms for Boolean networks. Computational and Structural Biotechnology Journal. 2022. 20. 2512-2520
more...
MISC (7):
-
杉原 礼一, 加藤 有己, 森 智弥, 河原 行郎. 1細胞RNA-seqデータを用いた細胞状態遷移経路アラインメント法の開発. RNA Frontier Meeting 2022. 2022
-
加藤 有己, 杉原 礼一, 森 智弥, 河原 行郎. CAPITALによるシングルセルデータの疑似時系列比較解析. 第43回日本分子生物学会年会. 2020
-
Yuki Kato, Reiichi Sugihara, Tomoya Mori, Yukio Kawahara. Alignment of complex single-cell trajectories with CAPITAL. 28th Conference on Intelligent Systems for Molecular Biology (ISMB2020). 2020. 725
-
劉 立偉, 森 智弥, 趙 楊, 林田 守広, 阿久津 達也. 根付き順序木の圧縮における分割型文法とオイラー文字列との比較. 電子情報通信学会技術研究報告. 2015. 115. 112. 245-246
-
Yuki Kato, Tomoya Mori, Kengo Sato, Shingo Maegawa, Hiroshi Hosokawa, Tatsuya Akutsu. Evaluating Effectiveness of Accessibility to Infer RNA-RNA Interactions. IPSJ SIG technical reports. 2013. 2013. 3. 1-2
more...
Patents (2):
-
個々の細胞情報から組織高次元情報を推定する装置、方法、プログラム
-
個々の細胞情報から細胞高次元情報を推定する装置・方法・プログラム
Books (3):
-
RNA Structure Prediction, Methods in Molecular Biology
Humana, New York 2023 ISBN:9781071627679
-
実験医学別冊 空間オミクス解析スタートアップ実践ガイド
Yodosha 2022 ISBN:9784758122610
-
実験医学増刊34(17):再生医療と疾患解明の鍵となる組織幹細胞
羊土社 2016 ISBN:9784758103589
Lectures and oral presentations (11):
-
Periodic attractor identification using a priori information in Boolean networks
(International Conference On Intelligent Computing 2022)
-
空間トランスクリプトームの自己組織化マップクラスタリングによる三次元組織インシリコ再構築
(第3回幹細胞情報学研究イニシアチブ研究会 2021)
-
分岐を考慮した時系列シングルセルデータのアラインメント
(第61回BIO研究発表会 2020)
-
In silico three-dimensional reconstruction and identification of spatial discriminator genes of mouse gastrula embryo structure by self-organizing map (SOM) clustering
(The 42nd Annual Meeting of the Molecular Biology Society of Japan 2019)
-
Novel computational model of gastrula morphogenesis to identify spatial discriminator genes by self-organizing map (SOM) clustering
(Japan-Germany International Workshop 2019-1 The Human Cell Type Authentication Initiative 2019)
more...
Education (3):
- 2012 - 2015 Kyoto University Graduate School of Informatics Department of Intelligence Science and Technology
- 2010 - 2012 Kyoto University Graduate School of Informatics Department of Intelligence Science and Technology
- 2006 - 2010 Doshisha University
Professional career (1):
- PhD (Informatics) (Kyoto University)
Work history (6):
- 2018/04/01 - Bioinformatics Center, Institute for Chemical Research, Kyoto University Assistant Professor
- 2016/04/01 - Center for iPS Cell Research and Application, Kyoto University Researcher
- 2015/11/01 - Center for iPS Cell Research and Application, Kyoto University JSPS Research Fellowship for Young Scientists (PD)
- 2015/10/01 - Bioinformatics Center, Institute for Chemical Research, Kyoto University JSPS Research Fellowship for Young Scientists (PD)
- 2014/04/01 - Bioinformatics Center, Institute for Chemical Research, Kyoto University JSPS Research Fellowship for Young Scientists (DC2)
- 2013/04/01 - Faculty of Culture and Information Science, Doshisha University -
Show all
Committee career (5):
- 2023/06 - 現在 Information Processing Society of Japan (IPSJ) 論文誌ジャーナル/JIP編集委員会 小委員会(基盤グループ [Computing Group])編集委員
- 2022/04 - 現在 Information Processing Society of Japan (IPSJ) Editorial Committee of IPSJ Transactions on Mathematical Modeling and Its Applications (TOM)
- 2021/04 - 現在 Information Processing Society of Japan (IPSJ) Editorial committee of IPSJ Transactions on Bioinformatics (TBIO)
- 2021/03 - 現在 Frontiers in Genetics Review Editor
- 2019/04 - 2023/03 Information Processing Society of Japan (IPSJ) Steering Committee of IPSJ SIG BIO
Awards (2):
- 2013/03 - 情報処理学会 山下記念研究賞
- 2012/03 - 情報処理学会バイオ情報学研究会 学生奨励賞
Association Membership(s) (2):
Information Processing Society of Japan
, Japanese Society for Bioinformatics
Return to Previous Page