Rchr
J-GLOBAL ID:201801007866743153
Update date: Mar. 11, 2024
Kawaguchi Risa K
カワグチ リサ | Kawaguchi Risa K
Affiliation and department:
Homepage URL (2):
https://carushi.github.io/cb_lab/index.html
,
https://carushi.github.io/cb_lab/index_en.html
Research field (3):
Molecular biology
, Systems genomics
, Biological, health, and medical informatics
Research theme for competitive and other funds (4):
- 2023 - 2027 Integrative analysis of the stochasticity of single-cell omics data for predicting pioneerness of transcription factors
- 2023 - 2023 Prediction of transcription factor pioneerness during the differentiation process of iPSC
- 2017 - 2020 Discovering inter-omics regulatory factors from multi-omics data based on structured covariance model
- 2014 - 2017 RNA二次構造におけるゲノムワイドな変異解析アルゴリズムの開発と進化解析への応用
Papers (19):
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Sara Ballouz, Risa Karakida Kawaguchi, Maria T. Pena, Stephan Fischer, Megan Crow, Leon French, Frank M. Knight, Linda B. Adams, Jesse Gillis. The transcriptional legacy of developmental stochasticity. Nature Communications. 2023. 14. 1
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Naoki Takizawa, Risa Karakida Kawaguchi. Comprehensive in virio structure probing analysis of the influenza A virus identifies functional RNA structures involved in viral genome replication. Computational and Structural Biotechnology Journal. 2023
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Risa Karakida Kawaguchi, Hisanori Kiryu. RNA Secondary Structure Alteration Caused by Single Nucleotide Variants. Methods in Molecular Biology. 2023. 2586. 107-120
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Risa Karakida Kawaguchi, Hisanori Kiryu. Genome-Wide RNA Secondary Structure Prediction. Methods in Molecular Biology. 2023. 2586. 35-48
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Risa Karakida Kawaguchi, Ziqi Tang, Stephan Fischer, Chandana Rajesh, Rohit Tripathy, Peter K Koo, Jesse Gillis. Learning single-cell chromatin accessibility profiles using meta-analytic marker genes. Briefings in Bioinformatics. 2022
more...
MISC (3):
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高橋雅道, 河口理紗, 河口理紗, 高橋慧, 三宅基隆, 木下学, 市村幸一, 浜本隆二, 成田善孝, 瀬々潤, et al. Versatile machine-learning approaches for radiogenomics of glioma in different cohorts. 日本癌学会学術総会抄録集(Web). 2019. 78th
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Kofuji Satoshi, Akiyoshi Hirayama, Naoya Sakamoto, Kazutaka Sumita, Hirofumi Yoshino, Mikako Warren, Risa Kawaguchi, Tatsuya Ozawa, Nobuyuki Onishi, Kara Wolfe, et al. GTP METABOLIC SWITCH LEADS TO NUCLEOLAR TRANSFORMATION AND MALIGNANT GROWTH OF GLIOBLASTOMA. NEURO-ONCOLOGY. 2017. 19. 35-35
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高橋宏隆, 壽美田一貴, 河口理紗, 河口理紗, 小藤智史, 小藤智史, 笠原亜希子, 井上竜也, 櫻井秀敬, 和田直也, et al. GTP結合タンパク質PIP4Kβによって制御される,PI(5)Pの標的タンパク質の網羅的探索系の構築. 日本生化学会大会(Web). 2017. 90th
Books (3):
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Multi-omics: Disease research in data-driven research era
2023 ISBN:9784758104135
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RNA Structure Prediction, Methods in Molecular Biology
Humana, New York. 2023 ISBN:9781071627686
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実験医学増刊 Vol.35 No.10 がん代謝 ワールブルグを超えて全容解明に挑む
羊土社 2017
Education (3):
- 2014 - 2017 The University of Tokyo Graduate School of Frontier Sciences Department of Computational Biology and Medical Sciences
- 2012 - 2014 The University of Tokyo Graduate School of Frontier Sciences Department of Computational Biology
- 2008 - 2012 The University of Tokyo Faculty of Science Undergraduate Program for Bioinformatics and Systems Biology
Professional career (1):
- Ph.D. (University of Tokyo)
Work history (7):
- 2023/04 - 現在 National Institute of Advanced Industrial Science and Technology Intelligent Bioinformatics Research Team, Artificial Intelligence Research Center (AIRC) Visiting Researcher
- 2022/05 - 現在 Center for iPS Cell Research and Application, Kyoto University Department of Life Science Frontiers Junior Associate Professor
- 2019/04 - 2022/04 Cold Spring Harbor Laboratory Postdoc Fellow
- 2019/04 - 2022/03 The National Institute of Advanced Industrial Science and Technology The Artificial Intelligence Research Center Collaborative researcher
- 2017/04 - 2020/03 National Cancer Center Research Institute Division of Molecular Modification and Cancer Biology External Research stuff
- 2017/04 - 2019/03 National Institute of Advanced Industrial Science and Technology Artificial Intelligence Research Center JSPS postdoctoral research fellow (PD)
- 2014/04 - 2017/03 University of Tokyo Department of Computational Biology and Medical Sciences Doctor course, JSPS research fellow (DC1)
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Committee career (7):
- 2023/04 - 2025/03 Japanese Society for Bioinformatics Board of Directors
- 2021/09 - 2021/09 IIBMP2021 Program committee
- 2018/04 - 2019/03 生命科学系フロンティアミーティング 運営委員
- 2014 - 2019 生命情報科学若手の会 運営委員
- 2017/04 - 2018/03 生命情報科学若手の会 代表
- 2015/04 - 2016/03 生命情報科学若手の会 学生代表
- 2013 - 2015 Asian Young Researchers Conference on Computational and Omics Biology (AYRCOB) Organizing committee
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Awards (6):
- 2021/03 - The Uehara Memorial Foundation Postdoctoral fellowship
- 2018/09 - The Japanese Society for Bioinformatics (JSBi) Poster Award
- 2017/03 - Department of Computational Biology and Medical Science, Graduate school of Frontier Sciences, The University of Tokyo Excellent Research Awards
- 2017/03 - The University of Tokyo Dean's award
- 2016 - Department of Computational Biology and Medical Science, Graduate school of Frontier Sciences, The University of Tokyo Young Scientist Superior Oral Presentation Awards
- 2014/03 - Graduate School of Frontier Sciences, The University of Tokyo Dean's award
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