Research theme for competitive and other funds (2):
2018 - 2021 Ecogenomics of prokaryotes, viruses, and microbial eukaryotes in deep freshwater lakes
2015 - 2018 琵琶湖深水層で優占する細菌系統CL500-11の生態解明
Papers (13):
Yusuke Okazaki, Shohei Fujinaga, Michaela M. Salcher, Cristiana Callieri, Atsushi Tanaka, Ayato Kohzu, Hideo Oyagi, Hideyuki Tamaki, Shin-ichi Nakano. Microdiversity and phylogeographic diversification of bacterioplankton in pelagic freshwater systems revealed through long-read amplicon sequencing. Microbiome. 2021. 9. 1
Koji Yahara, Masato Suzuki, Aki Hirabayashi, Wataru Suda, Masahira Hattori, Yutaka Suzuki, Yusuke Okazaki. Long-read metagenomics using PromethION uncovers oral bacteriophages and their interaction with host bacteria. Nature Communications. 2021. 12. 1
Ryosuke Nakadai, Yusuke Okazaki, Shunsuke Matsuoka. Describing macroecological patterns in microbes: Approaches for comparative analyses of operational taxonomic unit read number distribution with a case study of global oceanic bacteria. Environmental DNA. 2020. 2. 4. 535-543