Okuda Aya

オクダアヤ | Okuda Aya

Affiliation and department：

Research field (1)： Applied biochemistry

Research theme for competitive and other funds (7)：

2023 - 2025 区分重水素化試料調製を目指した酵素によるタンパク質ライゲーション技術の確立
2022 - 2023 大豆たん白質複合体の溶液散乱法・超遠心分析・質量分析による統合的解析
2019 - 2022 量子ビーム相関解析法による生体高分子構造・ダイナミクスの探求
2019 - 2020 中性子小角散乱による大豆種子貯蔵たん白質構造の解析方法の開発
2019 - 2020 中性子小角散乱測定による酸化的フォールディング酵素ER-60のタンパク質分子ダイナミクスの解析

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Papers (17)：

Hisashi Ishida, Atsushi Matsumoto, Hiroki Tanaka, Aya Okuda, Ken Morishima, Paul A Wade, Hitoshi Kurumizaka, Masaaki Sugiyama, Hidetoshi Kono. Structural and Dynamical Changes of Nucleosome upon GATA3 Binding. Journal of molecular biology. 2023. 168308-168308
Toshiyuki Chatake, Yasuhide Yanagisawa, Risa Murakami, Tadanori Ohsugi, Hiroyuki Sumi, Takumi Takata, Aya Okuda, Ken Morishima, Rintaro Inoue, Masaaki Sugiyama. Characterization of K-binding factor involved in water-soluble complex of menaquinone-7 produced by Bacillus subtilis natto. The Journal of Biochemistry. 2023
Aya Okuda, Masahiro Shimizu, Rintaro Inoue, Reiko Urade, Masaaki Sugiyama. Efficient Multiple Domain Ligation for Proteins Using Asparaginyl Endopeptidase by Selection of Appropriate Ligation Sites Based on Steric Hindrance. Angewandte Chemie (International ed. in English). 2023. 62. 1. e202214412
Masahiro Shimizu, Aya Okuda, Ken Morishima, Rintaro Inoue, Nobuhiro Sato, Yasuhiro Yunoki, Reiko Urade, Masaaki Sugiyama. Extracting time series matching a small-angle X-ray scattering profile from trajectories of molecular dynamics simulations. Scientific Reports. 2022. 12. 1. 9970-9970
Yasuhiro Yunoki, Atsushi Matsumoto, Ken Morishima, Anne Martel, Lionel Porcar, Nobuhiro Sato, Rina Yogo, Taiki Tominaga, Rintaro Inoue, Maho Yagi-Utsumi, et al. Overall structure of fully assembled cyanobacterial KaiABC circadian clock complex by an integrated experimental-computational approach. Communications biology. 2022. 5. 1. 184-184

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MISC (2)：

森田さより, 佐藤信浩, 守島健, 奥田綾, 杉木俊彦, 花田賢太郎, 杉山正明, 児嶋長次郎. セラミド輸送タンパク質CERTの構造解析. 日本分子生物学会年会プログラム・要旨集(Web). 2020. 43rd
裏出令子, 伊中浩治, 古林直樹, 東野ゆうき, 松崎元紀, 奥田綾, 加茂昌之. 小胞体分子シャペロンER-60によるペプチド結合様式. SPring-8/SACLA利用研究成果集(Web). 2018. 6. 1

Education (3)：

2014 - 2017 Kyoto University Graduate School of Agriculture Division of Agronomy and Horticultural Science
2012 - 2014 Kyoto University Graduate School of Agriculture Division of Agronomy and Horticultural Science
2008 - 2012 Kyoto University Faculty of Agriculture

Professional career (1)：

博士(農学) (京都大学)

Work history (6)：

2023/10 - 現在 Kyoto University Institute for Integrated Radiation and Nuclear Science
2021/02 - 2023/09 Kyoto University Institute for Integrated Radiation and Nuclear Science
2019/04 - 2021/01 Kyoto University Institute for Integrated Radiation and Nuclear Science
2018/04 - 2019/03 Kyoto University Graduate School of Agriculture
2017/04 - 2018/03 Kyoto University Graduate School of Agriculture

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Association Membership(s) (4)：

PROTEIN SCIENCE SOCIETY OF JAPAN , THE JAPANESE BIOCHEMICAL SOCIETY , JAPAN SOCIETY FOR BIOSCIENCE, BIOTECHNOLOGY, AND AGROCHEMISTRY , 日本中性子科学会

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