Akifumi Nishida

ニシダアキフミ | Akifumi Nishida

Affiliation and department：

Research field (2)： Biological, health, and medical informatics , Applied microbiology

Research theme for competitive and other funds (6)：

2023 - 2027 Water quality monitoring of permafrost regions on the Mongolian Plateau and the paleoenvironmental reconstructions using the lacustrine sediment cores
2022 - 2025 Microbial genome resource mining of Japanese agricultural soil
2021 - 2024 Cell-free protein snthesis system of non-model bacteria developed by transfer learning
2018 - 2019 Mathematical modeling of microbiome ecosystems for elucidating environmental issues
2017 - 2019 多摩川の微生物生態系モデル構築による下水処理水の影響や季節変動の解析

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Papers (8)：

Alexis Gilbert, Mayuko Nakagawa, Koudai Taguchi, Naizhong Zhang, Akifumi Nishida, Naohiro Yoshida. Hydrocarbon Cycling in the Tokamachi Mud Volcano (Japan): Insights from Isotopologue and Metataxonomic Analyses. Microorganisms. 2022. 10. 7. 1417-1417
Shuuki Takizawa, Akifumi Nishida, Masayuki Yamamura. Alternative state transition control by regulating the spatial arrangement of organisms using a lattice model. Ecosphere. 2022. 13. 3
Akifumi Nishida, Mayuko Nakagawa, Masayuki Yamamura. Determinism of microbial community assembly by drastic environmental change. PLOS ONE. 2021. 16. 12. e0260591-e0260591
Satoshi WATANABE, Shoichiro KAMEOKA, Natsuko O. SHINOZAKI, Ryuichi KUBO, Akifumi NISHIDA, Minoru KURIYAMA, Aya K. TAKEDA. A cross-sectional analysis from the Mykinso Cohort Study: establishing reference ranges for Japanese gut microbial indices. Bioscience of Microbiota, Food and Health. 2021. 40. 2. 123-134
Hirokazu Fukui†, Akifumi Nishida†, Satoshi Matsuda, Fumitaka Kira, Satoshi Watanabe, Minoru Kuriyama, Kazuhiko Kawakami, Yoshiko Aikawa, Noritaka Oda, Kenichiro Arai, et al. Usefulness of Machine Learning-Based Gut Microbiome Analysis for Identifying Patients with Irritable Bowels Syndrome. Journal of Clinical Medicine. 2020. 9(8). 2403

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Lectures and oral presentations (1)：

Education (4)：

2013 - 2018 Tokyo Institute of Technology Interdisciplinary Graduate School of Science and Engineering Department of Computational Intelligence and Systems Science
2010 - 2012 Tokyo Institute of Technology Interdisciplinary Graduate School of Science and Engineering Department of Computational Intelligence and Systems Science
2008 - 2010 Tokyo Institute of Technology School of Engineering Dept. of Control and Systems Engineering
2003 - 2008 Kitakyushu National College of Technology Dept. of Control and Information Systems Engineering

Work history (5)：

2022/04 - 現在東京農業大学分子微生物学科助教
2019/09 - 2022/03 Waseda University Faculty of Science and Engineering Assistant Professor
2019/04 - 2019/08 Waseda University Faculty of Science and Engineering Assistant Professor
2018/04 - 2019/03 Tokyo Institute of Technology School of Computing postdoctral researcher
2012/04 - 2013/03 Shimadzu Corp. Analytical & Measuring Instruments Division

Awards (3)：

2015/03 - poster award Attenuating high-frequency noise of a two-component system responding to short-pulse input
2013/10 - poster award Dynamical control of protein concentration using synthetic two-component system
2008/03 - 日本機械学会畠山賞

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