Yamada Daichi

ヤマダダイチ | Yamada Daichi

Affiliation and department：
Job title：助教
Homepage URL (1)： https://ramanir311.wixsite.com/kubolabo-uoh

Research field (2)： Structural biochemistry , Biophysics

Research keywords (7)：時間分解分光 , 光回復酵素・クリプトクロムファミリー , Biophysics , Enzyme , DNA repair , Infrared spectroscopy , Photoreceptor protein

Research theme for competitive and other funds (3)：

2021 - 2022 表面増強赤外分光法を用いた温度感受性チャネルの反応機構解明
2017 - 2020 Functional analysis of the photolyase/cryptochrome family using databases and experimental methods
2013 - 2016 赤外分光法による(6-4)光回復酵素の分子メカニズムの解明

Papers (14)：

Daichi Yamada, Junpei Yamamoto, Elizabeth D. Getzoff, Tatsuya Iwata, Hideki Kandori. Structural Changes during the Photorepair and Binding Processes of Xenopus (6-4) Photolyase with (6-4) Photoproducts in Single- and Double-Stranded DNA. Biochemistry. 2021. 60. 43. 3253-3261
Takashi Nomura, Tetsunari Kimura, Yusuke Kanematsu, Daichi Yamada, Keitaro Yamashita, Kunio Hirata, Go Ueno, Hironori Murakami, Tamao Hisano, Raika Yamagiwa, et al. Short-lived intermediate in N2O generation by P450 NO reductase captured by time-resolved IR spectroscopy and XFEL crystallography. Proceedings of the National Academy of Sciences. 2021. 118. 21. e2101481118-e2101481118
Keiichi Inoue, Masayuki Karasuyama, Ryoko Nakamura, Masae Konno, Daichi Yamada, Kentaro Mannen, Takashi Nagata, Yu Inatsu, Hiromu Yawo, Kei Yura, et al. Exploration of natural red-shifted rhodopsins using a machine learning-based Bayesian experimental design. Communications biology. 2021. 4. 1. 362-362
Tatsuya Iwata, Daichi Yamada, Katsuhiro Mikuni, Kazuya Agata, Kenichi Hitomi, Elizabeth D Getzoff, Hideki Kandori. ATP binding promotes light-induced structural changes to the protein moiety of Arabidopsis cryptochrome 1. Photochemical & photobiological sciences : Official journal of the European Photochemistry Association and the European Society for Photobiology. 2020. 19. 10. 1326-1331
Yamauchi Y, Konno M, Yamada D, Yura K, Inoue K, Béjà O, Kandori H. Engineered Functional Recovery of Microbial Rhodopsin Without Retinal-Binding Lysine. Photochemistry and photobiology. 2019. 95. 5. 1116-1121

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MISC (3)：

YAMAUCHI Yumeka, KONNO Masae, YAMADA Daichi, YAMADA Daichi, YURA Kei, YURA Kei, INOUE Keiichi, INOUE Keiichi, BEJA Oded, KANDORI Hideki. Engineering microbial rhodopsin without retinal-binding lysine to gain photosensitive function. 生物物理(Web). 2019. 59. Supplement 1-2
D. Yamada, H. M. Dokainish, T. Iwata, J. Yamamoto, T. Ishikawa, T. Todo, S. Iwai, E. D. Getzoff, K. Yura, A. Kitao, et al. Function conversion between CPD and (6-4) photolyases. EUROPEAN BIOPHYSICS JOURNAL WITH BIOPHYSICS LETTERS. 2017. 46. S82-S82
D. Yamada, T. Iwata, J. Yamamoto, T. Ishikawa, E. D. Getzoff, T. Todo, S. Iwai, H. Kandori. Asymmetrical functional conversion of (6-4) photolyase and CPD photolyase. EUROPEAN BIOPHYSICS JOURNAL WITH BIOPHYSICS LETTERS. 2015. 44. S66-S66

Lectures and oral presentations (106)：

Time-resolved microspectroscopic detection of a key intermediate in the UV-damaged DNA repair by (6-4) photolyase.
(Molecular Movies International Symposium 2022 2022)
時間分解顕微分光法による酵素タンパク質の分子メカニズム研究
(2022年度第2回光機能研究会 2022)
時間分解顕微分光法による構造ダイナミクス研究
(第35回日本放射光学会年会・放射光科学合同シンポジウム 2022)
振動分光法を用いた部位選択的構造解析
(第3回技術・人材マッチング交流会 2021)
Microflow-flash UV-vis spectroscopic analysis of DNA photorepair reaction catalyzed by cryptochrome
(The 59th Annual Meeting of the Biophysical Society of Japan 2021)

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Education (3)：

2013 - 2016 Nagoya Institute of Technology
2011 - 2013 Nagoya Institute of Technology
2007 - 2011 Nagoya Institute of Technology Faculty of Engineering

Professional career (1)：

工学博士 (名古屋工業大学)

Work history (5)：

2021/04 - 現在 University of Hyogo Graduate School of Science Assistant Professor
2019/04 - 2021/03 University of Hyogo Graduate School of Life Science Assistant Professor
2017/04 - 2019/03 名古屋工業大学
2016/04 - 2017/03 Ochanomizu University
2013/04 - 2016/03 独立行政法人日本学術振興会

Committee career (2)：

2019/06 - 2021/06 第47回生体分子科学討論会第47回生体分子科学討論会実行委員会
2014/01 - 2015/01 生物物理若手の会会長

Awards (3)：

2015/12 - 分子科学会分子科学会優秀ポスター賞
2014/08 - 日本光生物学協会日本光生物学協会ポスター賞
2011/03 - 日本生物物理学会中部支部最優秀発表賞金賞

Association Membership(s) (2)：

JAPAN SOCIETY FOR MOLECULAR SCIENCE , THE BIOPHYSICAL SOCIETY OF JAPAN

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