Rsrc
J-GLOBAL ID:201810020635829811   Research Resource code:NBDC02376 Update date:Oct. 09, 2018

NGSmethDB

NGSmethDB
Owning Organization:
  • Computational Epigenomics Lab, Evolutionary Genomics and Bioinformatics Group, Dept. of Genetics, Inst. of Biotechnology, University of Granada
Resource classification: Database
Tag (subject)  (2): Genome/Gene ,  Epigenetics
Tag (data type)  (2): Sequence ,  Distribution
Species (6): Homo sapiens (NCBI Taxonomy ID: 9606) ,  Mus musculus (NCBI Taxonomy ID: 10090) ,  Arabidopsis thaliana (NCBI Taxonomy ID: 3702) ,  Pan troglodytes (NCBI Taxonomy ID: 9598) ,  Rhesus macaque (NCBI Taxonomy ID: 9544) ,  Solanum lycopersicum (NCBI Taxonomy ID: 4081)
Overview:
NGSmethDB is a database for whole genome methylomes generated from short-read data sets obtained by bisulfite sequencing (WGBS) technology. Publicly available short-read data sets, mainly from NCBI GEO and the ROADMAP project, were used for the analysis by MethFlow that was an original pipeline for the integral analysis of bisulfite sequencing data. Selected data or dumps for entire methylomes can be downloaded on the web. Programmatic access to the database is also available.
Source: NBDC

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