Rchr
J-GLOBAL ID:201901013468136481
Update date: Nov. 28, 2024
Kawaji Hideya
Kawaji Hideya
Affiliation and department:
Job title:
Associate Center Director
Other affiliations (1):
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RIKEN
RIKEN Center for Integrative Medical Sciences
Research field (1):
Systems genomics
Research theme for competitive and other funds (7):
- 2021 - 2024 Evaluating the role of cis-regulatory tandem DNA repeats in human disease and evolution
- 2020 - 2024 Elucidation for genetic regulation of enhancer expression and interpretation of genetic architecture in autoimmune diseases
- 2016 - 2021 Reverse engineering of transcriptional regulatory regions through data modeling of transcription initiation activities
- 2016 - 2018 Development of a genomics data sharing platform in Asia
- 2015 - 2018 Identification of biomarkers to diagnose lymph node metastasis based on gene expression patterns in primary lesion of endometrial carcinoma
- 2014 - 2017 Research for blood RNA marker predicting prognosis of glaucoma focusing on the early and individualized medicine.
- 2010 - 2011 Comprehensive analysis of miRNA promoters
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Papers (167):
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Tomoe Nobusada, Chi Wai Yip, Saumya Agrawal, Jessica Severin, Imad Abugessaisa, Akira Hasegawa, Chung Chau Hon, Satoru Ide, Masaru Koido, Atsushi Kondo, et al. Update of the FANTOM web resource: enhancement for studying noncoding genomes. Nucleic acids research. 2024
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Akiko Oguchi, Akari Suzuki, Shuichiro Komatsu, Hiroyuki Yoshitomi, Shruti Bhagat, Raku Son, Raoul Jean Pierre Bonnal, Shohei Kojima, Masaru Koido, Kazuhiro Takeuchi, et al. An atlas of transcribed enhancers across helper T cell diversity for decoding human diseases. Science (New York, N.Y.). 2024. 385. 6704. eadd8394
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Francisco J Pardo-Palacios, Dingjie Wang, Fairlie Reese, Mark Diekhans, Sílvia Carbonell-Sala, Brian Williams, Jane E Loveland, Maite De María, Matthew S Adams, Gabriela Balderrama-Gutierrez, et al. Systematic assessment of long-read RNA-seq methods for transcript identification and quantification. Nature methods. 2024. 21. 7. 1349-1363
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Jun Tsuyama, Seiichiro Sakai, Kumiko Kurabayashi, Ryuki Koyama, Yuichiro Hara, Ito Kawakami, Hideya Kawaji, Takashi Shichita. Sustaining microglial reparative function enhances stroke recovery. 2024
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Kosuke Yamazaki, Tomohiro Iguchi, Yutaka Kanoh, Kazuto Takayasu, Trinh Thi To Ngo, Ayaka Onuki, Hideya Kawaji, Shunji Oshima, Tomomasa Kanda, Hisao Masai, et al. Homologous recombination contributes to the repair of acetaldehyde-induced DNA damage. Cell cycle (Georgetown, Tex.). 2024. 23. 4. 369-384
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MISC (39):
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粕川雄也, WALKER Scott, 長谷川哲, THALHATH Nishad, 信定知江, 沖真弥, 高田豊行, 桝屋啓志, 川路英哉. INTRARED: a data platform for transcriptional regulation that integrates cis-regulatory elements, trans-factors, and epigenome information. 日本分子生物学会年会プログラム・要旨集(Web). 2023. 46th
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富田 康文, 鈴木 一浩, 田畑 光一, 川路 英哉, 宮下 光弘, 鳥海 和也, 山崎 修道, 安藤 俊太郎, 笠井 清登, 西田 淳志, et al. 尿中エキソソーム含有miRNAによる精神病様体験の持続の予測. 日本生化学会大会プログラム・講演要旨集. 2022. 95回. 2P-315
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吉川 茜, 久島 周, 宮下 光弘, 鈴木 浩一, 鳥海 和也, 堀内 泰江, 川路 英哉, 瀧澤 俊也, 尾崎 紀夫, 糸川 昌成, et al. 糖化ストレスを伴う統合失調症におけるIMMP2L遺伝子欠失-臨床特徴と新規治療法開発の可能性. 精神神経学雑誌. 2021. 2021特別号. S573-S573
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Masaru Koido, Chung-Chau Hon, Satoshi Koyama, Hideya Kawaji, Yasuhiro Murakawa, Kazuyoshi Ishigaki, Kaoru Ito, Jun Sese, Yoichiro Kamatani, Piero Carninci, et al. Predicting cell-type-specific non-coding RNA transcription from genome sequence. bioRxiv. 2020
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遺伝子モデルと核酸医薬創薬に資するゲノム・RNAデータベース. 2020. 78. 2
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Books (1):
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RとBioconductorを用いたバイオインフォマティクス
丸善出版 2012 ISBN:9784621062500
Lectures and oral presentations (18):
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血管生検を用いた網羅的トランスクリプトーム解析による巨細胞性動脈炎の分子病態の解明
(第46回日本分子生物学会年会 2023年12月 2023)
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Unraveling the genomic code in gene regulation
(TMIMS International Symposium on Cells and Chromosomes 2023)
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転写制御理解のためのゲノムワイドなシスエレメントデータベースfanta.bio
(日本生化学会大会(Web) 2023)
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Genomics resource of non human primates: recent updates and future perspective
(43th annual meeting of the molecular biology society of Japan, 2020)
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Functional Annotation of Non-Coding Genomic Regions of Non-Human Primates
(International Plant & Animal Genome XXVIII 2020)
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Work history (1):
- 2023/04 - 現在 RIKEN RIKEN Center for Integrative Medical Sciences
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