Rchr
J-GLOBAL ID：201901014716804301   Update date: May. 17, 2024

Nishimura Yosuke

Nishimura Yosuke | Nishimura Yosuke
Affiliation and department：
Japan Agency for Marine-Earth Science and Technology Research Center for Bioscience and Nanoscience

About Japan Agency for Marine-Earth Science and Technology Research Center for Bioscience and Nanoscience


Job title： Researcher
Research field  (4)： Biodiversity and systematics ,  Evolutionary biology ,  Genomics ,  Environmental dynamics
Research keywords  (11)： rhodopsin ,  database ,  genetic analysis ,  multiomics ,  phylogenetic analysis ,  comaparative genomics ,  data visualization ,  bioinformatics ,  virus ,  marine microbe ,  metagenome
Research theme for competitive and other funds  (3)：
  • 2022 - 2025 全球規模のロドプシン情報基盤の開発ー光利用の環境特性の解明と応用利用に向けてー
  • 2022 - 2024 ウイルスを捉えて生物圏機能を根底から理解する-革新的メタゲノム解析技術の開発-
  • 2021 - 2024 メタゲノムビッグデータを活用した微生物の環境適応因子の解明
Papers (30)：
  • Justine Charon, Ingrida Olendraite, Marco Forgia, Li Chuin Chong, Luke S. Hillary, Simon Roux, Anne Kupczok, Humberto Debat, Shoichi Sakaguchi, Rachid Tahzima, et al. Consensus statement from the first RdRp Summit: advancing RNA virus discovery at scale across communities. Frontiers in Virology. 2024. 4
  • Yosuke Nishimura, Kohei Yamada, Yusuke Okazaki, Hiroyuki Ogata. DiGAlign: Versatile and Interactive Visualization of Sequence Alignment for Comparative Genomics. Microbes and Environments. 2024. 39. 1. ME23061
  • Mako Takada, Chunqi Jiang, Youta Sugai, Masumi Hasegawa-Takano, Takayoshi Fujiwara, Yuya Tsukamoto, Yu Nakajima, Yosuke Nishimura, Susumu Yoshizawa. Draft genome sequences of three rhodopsin possessing Croceitalea sp. strains, isolated from the sea surface microlayer in Japan. Microbiology resource announcements. 2024. e0003824
  • Syun-ichi Urayama, Akihito Fukudome, Miho Hirai, Tomoyo Okumura, Yosuke Nishimura, Yoshihiro Takaki, Norio Kurosawa, Eugene V. Koonin, Mart Krupovic, Takuro Nunoura. Double-stranded RNA sequencing reveals distinct riboviruses associated with thermoacidophilic bacteria from hot springs in Japan. Nature Microbiology. 2024. 9. 2. 514-523
  • Susumu Yoshizawa, Tomonori Azuma, Keiichi Kojima, Keisuke Inomura, Masumi Hasegawa, Yosuke Nishimura, Masuzu Kikuchi, Gabrielle Armin, Yuya Tsukamoto, Hideaki Miyashita, et al. Light-driven Proton Pumps as a Potential Regulator for Carbon Fixation in Marine Diatoms. Microbes and Environments. 2023. 38. 2. ME23015
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MISC (8)：
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Lectures and oral presentations  (37)：
  • RNAウイルスのゲノム複製を担う酵素RdRpの「特異な」進化
    (第18回日本ゲノム微生物学会年会 2024)
  • データベースのMAG、信頼できますか?
    (日本微生物生態学会 第36回大会 2023)
  • How to report the divided RdRps
    (The First RdRp Summit 2023)
  • .
    (ESJ70 2023)
  • 大規模データ解析で明らかにする 海洋光合成細菌の生態学的分布とその進化
    (第17回日本ゲノム微生物学会年会 2023)
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Works (1)：
  • ViPTree (https://www.genome.jp/viptree/)
    Yosuke Nishimura 2017 -
Work history (2)：
  • 2024/04 - 現在 Japan Agency for Marine-Earth Science and Technology CeBN Researcher
  • 2022/04 - 2024/03 Japan Agency for Marine-Earth Science and Technology Research Center for Bioscience and Nanoscience Project Researcher
Awards (1)：
  • 2015/10 - 生命医薬情報学連合大会 2015年大会 研究奨励賞
Association Membership(s) (3)：
日本ゲノム微生物学会 ,  THE JAPANESE SOCIETY OF MICROBIAL ECOLOGY ,  JAPANESE SOCIETY FOR BIOINFORMATICS
※ Researcher’s information displayed in J-GLOBAL is based on the information registered in researchmap. For details, see here.

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