Research theme for competitive and other funds (6):
2023 - 2026 分子動力学と分光実験に基づく膜透過現象に対する共溶媒効果の究明
2021 - 2026 Cross-scale data-driven modeling of biomolecular dynamics in the cells
2023 - 2024 Dynamics analysis of cosolvent effects on membrane permeation processes
2022 - 2023 Dynamics analysis of the effects of heterogeneous environments on protein-substrate binding processes
2021 - 2023 Development of a methodology of analyzing molecular association processes in heterogeneous environments
2015 - 2017 溶液内における蛍光消光反応ダイナミクスの分子理論
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Papers (30):
Yuya Matsubara, Ryo Okabe, Ren Masayama, Nozomi Morishita Watanabe, Hiroshi Umakoshi, Kento Kasahara, Nobuyuki Matubayasi. A methodology of quantifying membrane permeability based on returning probability theory and molecular dynamics simulation. arXiv preprint arXiv:2404.11363. 2024
Kokoro Shikata, Kento Kasahara, Nozomi Morishita Watanabe, Hiroshi Umakoshi, Kang Kim, Nobuyuki Matubayasi. Influence of cholesterol on hydrogen-bond dynamics of water molecules in lipid-bilayer systems at varying temperatures. arXiv preprint arXiv:2403.08289. 2024
Kazuya Okita, Natsuumi Ito, Nozomi Morishita-Watanabe, Hiroshi Umakoshi, Kento Kasahara, Nobuyuki Matubayasi. Solvation dynamics on the diffusion timescale elucidated using energy-represented dynamics theory. Physical Chemistry Chemical Physics. 2024
Stefan Hervø-Hansen, Daoyang Lin, Kento Kasahara, Nobuyuki Matubayasi. Free-energy decomposition of salt effects on the solubilities of small molecules and the role of excluded-volume effects. Chemical Science. 2024. 15. 2. 477-489
Kento Kasahara, Ren Masayama, Kazuya Okita, Nobuyuki Matubayasi. Elucidating protein-ligand binding kinetics based on returning probability theory. The Journal of Chemical Physics. 2023
Yuji Sugita, Kento Kasahara, Hiraku Oshima, Isseki Yu, Grzegorz Nawrocki, Suyong Re, Michael Feig. Simulations of biomolecules in cellular crowded environments. JOURNAL OF BIOMOLECULAR STRUCTURE & DYNAMICS. 2019. 37. 51-52
Atomistic Description of Molecular Binding Processes Based on Bimolecular Reaction Theory
(9th International Discussion Meeting on Relaxations in Complex Systems (9IDMRCS) 2023)
分子会合ダイナミクスを記述する理論的手法の開発
(研究会「理論化学若手セミナー」 2023)
Atomistic Description of Molecular Binding Processes Based on Bimolecular Reaction Theory
(StudyCamp2023 2023)
Theoretical analysis of molecular association processes based on statistical mechanics of solution and molecular dynamics
(2022)