- 2022 - 2025 説明可能AIによる1細胞計測大規模ネットワークデータからの知識発見技術の開発
- 2015 - 2022 Support for International Cooperation in Systems Cancer in Neo-dimension
- 2020 - 2021 新学術領域研究「システム癌新次元」研究成果取りまとめ
- 2016 - 2020 Integrative analysis of lineage-survival signaling in lung adenocarcinoma
- 2015 - 2020 Neodimensional exploration for cancer systems by supercomputing and innovative information technology
- 2015 - 2020 Strategies for research policies in the area
- 2015 - 2020 Conquering cancer through neo-dimensional systems understanding
- 2015 - 2020 Establishing Theoretical Foundations for Mathematical Modeling of Pathological Biosystems and its Applications to Personalized Medicine
- 2016 - 2019 Study on very high-speed data communications with secret and secure capability
- 2015 - 2018 Investigation of intratumoral heterogeneity in intrahepatic cholangiocarcinoma using multiregional analysis and innovative drug target discovery
- 2015 - 2018 Comprehensive epigenome-transcriptome analysis of hepatocellular carcinoma after eradication of hepatitis C
- 2015 - 2018 Spacial and temporal comics analysis dissolve the evolution and heterogeneity in ESCC.
- 2013 - 2016 Medical informatics infrastructure for personalized genomic medicine
- 2013 - 2016 Roles of TTF-1/NKX2-1 lineage-survival oncogene in lung adenocarcinoma
- 2011 - 2015 Analysis of microRNA and Gene regulating radiosensitivity improving of radiotheraphy for esophageal cancer
- 2010 - 2015 Integrative Systems Understanding of Cancer for Advanced Diagnosis, Therapy and Prevention
- 2010 - 2015 Development of Systems Cancer Research by Computation and Simulation
- 2010 - 2015 Systems Cancer Research Executive Committee
- 2010 - 2012 Drug-response pathway analysis methods based on network analysis
- 2009 - 2011 Relations between characteristic features of biological dynamic pathway models and gene polymorphisms or gene functions
- 2008 - 2010 Systems biological analysis of dynamic regulation of stem cells and development by growth factors
- 2005 - 2009 Estimation and simulation of gene networks for developing in silico biological networks
- 2006 - 2008 In Silico Search for Drug Target Pathways by Gene Networks
- 2004 - 2006 Pattern Matching Methods for Structured Data in Bioinformatics
- 2004 - 2006 Search for the genes responsible for adaptation to marine environments: osmoregulatory hormone genes
- 2005 - 2005 がん発生・抑止機構の計算機モデル化によるシステム的理解と新分子標的推定手法の開発
- 2003 - 2005 Information Scientific Foundations of Knowledge Discovery from Proteome Data
- 2000 - 2005 Genome Information Science
- 2003 - 2004 Information Technoloy for Gene Network Analysis
- 2000 - 2004 配列情報に潜む規則性の発見
- 2001 - 2003 Algorithms for Extraction of Common Patterns from Data in Bioinformatics
- 2000 - 2002 Foundations of Computational Knowledge Discovery from cDNA Microarray Data
- 1998 - 2000 Foundations of Knowledge Discovery from Science and Business Information
- 1998 - 2000 Knowledge Discovery in Databases
- 1996 - 2000 Biological Knowledge Based on Genome Information
- 1997 - 1999 Development of Data Mining System Using Binary Decision Diagrams for Knowledge Representation
- 1996 - 1998 An interdisciplinary study on categorical computer mathematics
- 1997 - 1997 巨大学術社会情報からの知識発見に関する基礎研究
- 1995 - 1997 Japan-French Joint Research on Genome
- 1994 - 1996 Development of Parallel Knowledge Acquisition System
- 1994 - 1996 Machine Discovery by Learning Algorithms
- 1994 - 1996 Synthetic Research on the Theory of Algorithms
- 1994 - 1995 STUDY ON EFFICIENT SEARCH ALGORITHMS
- 1991 - 1995 ゲノム解析に伴う大量知識情報処理の研究
- 1992 - 1992 並列学習アルゴリズムによる大量ゲノムデータからの知識獲得の研究
- 1990 - 1992 超多重並行処理アーキテクチャと宣言型ソフトウェア方式実用化の研究
- 1991 - 1991 並列学習アルゴリズムによる大量ゲノムデ-タからの知識獲得の研究
- 1990 - 1991 Algorithmic research on computational learning and teaching
- 1990 - 1990 ソフトウェア構成法における類推と帰納推論
- 1989 - 1989 推論による学習の基礎研究
- 1987 - 1989 Knowledge Information Processing System Based on Analogical Reasoning
- 1988 - 1988 推論による学習の基礎研究
- 1987 - 1988 Studies on Foundations of Software Reuse by Inductive Inference and Analogical Reasoning
- 1987 - 1987 計算科学への圏論の応用
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