J-GLOBAL ID:202010000278118224   Research Resource code:NBDC02489 Update date:Jan. 21, 2020

Pancan-meQTL: Methylation quantitative trait loci in cancer

Pancan-meQTL: Pan-cancer methylation quantitative trait loci
Owning Organization:
  • Huazhong University of Science and Technology
  • UTHealth (University of Texas Health Science Center at Houston)
Resource classification: Data,Database
Tag (subject)  (4): Genome/Gene ,  Genetic variation ,  Epigenetics ,  Health/Disease
Tag (data type)  (3): Sequence ,  Phenotype ,  Expression
Species (1): Homo sapiens (NCBI Taxonomy ID: 9606)
Pancan-meQTL is a database for systematically prediction about the effects of SNPs on methylation levels of human genome. It provides cis-meQTLs (SNPs affect local methylation levels of CpG sties) and trans-meQTLs (SNPs affect distant methylation levels of CpG sites) across cancer types by using thousands of genotype and methylation data from The Cancer Genome Atlas (TCGA). Users can browse or search following information;
1) cis-meQTLs and trans-meQTLs across different cancer types
2) meQTLs associated with patient overall survival across different cancer types
3) meQTLs in GWAS linkage disequilibrium (LD) regions.
Source: NBDC
Record maintainer: Integbio Database Catalog
Record license: Creative Commons CC0 license

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