J-GLOBAL ID:202010002057337102   Research Resource code:NBDC02429 Update date:Jul. 02, 2019

NLDB: Natural Ligand DataBase

NLDB: Natural Ligand DataBase
Owning Organization:
Resource classification: Data,Database
Tag (subject)  (3): Protein ,  Metabolite ,  Chemical compound
Tag (data type)  (2): 3D structure ,  Interaction/Pathway
NLDB is a database of automatically collected and predicted 3D protein-ligand interactions in the enzymatic reactions of metabolic pathways registered in KEGG. NLDB provides three different types of data resources; the natural complexes are experimentally determined protein-ligand complex structures in PDB, the analog complexes are predicted based on known protein structures in a complex with a similar ligand, and the ab initio complexes are predicted by docking simulations. The database has a flexible search function based on various types of keywords, and an enrichment analysis function based on a set of KEGG compound IDs. In addition, NLDB shows the known polymorphisms found in human genome on protein structures.
Source: NBDC
Record maintainer: Integbio Database Catalog
Record license: Creative Commons CC0 license

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