Rsrc
J-GLOBAL ID：202010002187410146
Research Resource code：NBDC02009
Update date：Mar. 28, 2019
Big Data Nucleic Acid Simulations Database: BIGNASim
Big Data Nucleic Acid Simulations Database: BIGNASim
Owning Organization：
-
ICREA (Cataland Institution for Research and Advanced Studies)
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BSC (Barcelona Supercomputing Center)
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Barcelona University
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Institute for Research in Biomedicine
Resource classification：
Data,Database
Tag (subject) (1)：
DNA
Tag (data type) (2)：
Sequence
, 3D structure
Species (1)：
All (NCBI Taxonomy ID: 1)
Overview：
Atomistic Molecular Dynamics Simulation Trajectories and Analyses of Nucleic Acid Structures.
BIGNASim is a complete platform to hold and analyse nucleic acids simulation data, based on two noSQL database engines: Cassandra to hold trajectory data and MongoDB for analyses and metadata. Most common analyses (helical parameters, NMR observables, sitffness, hydrogen bonding and stacking energies and geometries) are pre-calculated for the trajectories available and shown using the interactive visualization offered by NAFlex interface. Additionaly, whole trajectories, fragments or meta-trajectories can be analysed or downloaded for further in-house processing.
Source：
FAIRsharing
Record maintainer：
See the corresponding part in the FAIRsharing record
Record license：
Creative Commons Attribution and Share-alike (CC-BY-SA) International 4.0 license
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