Rsrc
J-GLOBAL ID:202010002187410146   Research Resource code:NBDC02009 Update date:Mar. 29, 2019

Big Data Nucleic Acid Simulations Database: BIGNASim

Big Data Nucleic Acid Simulations Database: BIGNASim
Owning Organization:
  • Cataland Institution for Research and Advanced Studies (ICREA)
  • Barcelona Supercomputing Center (BSC)
  • Barcelona University
  • Institute for Research in Biomedicine
Resource classification: Database
Tag (subject)  (1): DNA
Tag (data type)  (2): Sequence ,  3D structure
Species (1): All (NCBI Taxonomy ID: 1)
Overview:
Atomistic Molecular Dynamics Simulation Trajectories and Analyses of Nucleic Acid Structures.

BIGNASim is a complete platform to hold and analyse nucleic acids simulation data, based on two noSQL database engines: Cassandra to hold trajectory data and MongoDB for analyses and metadata. Most common analyses (helical parameters, NMR observables, sitffness, hydrogen bonding and stacking energies and geometries) are pre-calculated for the trajectories available and shown using the interactive visualization offered by NAFlex interface. Additionaly, whole trajectories, fragments or meta-trajectories can be analysed or downloaded for further in-house processing.
Source: FAIRsharing
Record maintainer: See the corresponding part in the FAIRsharing record
Record license: Creative Commons Attribution and Share-alike (CC-BY-SA) International 4.0 license

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